Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3846 104 2e-17 >seq3846 Length=171336 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| |||||| |||| || || || || ||||||||||| ||||| || | | Sbjct 15428 CCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGAC 15487 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || ||||| || || ||| | || |||| ||| || || || Sbjct 15488 AAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGA 15547 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||||| |||||| | | | || ||| | ||| | Sbjct 15548 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACT 15607 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||||||| || || | ||| || |||||||||||||| Sbjct 15608 TCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||| || || | | || | || ||||||||||| || Sbjct 15230 GTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCA 15289 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||||||||| || || | ||||| ||||| |||||| ||| Sbjct 15290 GCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTC 15349 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | ||| ||| | ||||| || || || || | |||| Sbjct 15350 ACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTT 15409 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 15410 TTGACAAAAATTTGCAT 15426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549947063062