Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 95.1 8e-15
>seq3846
Length=171336
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | || || ||||| || |||||||| || || || | || ||| ||
Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||||| ||| ||| || ||||| |||||||| | || || || || || || |
Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 16021
Query 33281 AT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
|| ||||| |||| ||| ||| |||||| || | ||| |||| || || |||
Sbjct 16022 ATTTTCGCCT---TTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTT 16078
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || ||||| || ||||||||||||||
Sbjct 16079 TTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
Score = 91.5 bits (100), Expect = 9e-14
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217
|| |||| ||| || || || || ||||| || ||||| |||||||| | || ||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502
Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---T 33274
|| | ||||||||| ||| || | || || ||||| | || ||||||||||| |
Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
| | | | || |||||| | | ||| |||||| || | || |||| || ||
Sbjct 15563 TGGATTTTTGC---TTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATG 15619
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || |||||||| || || |||||||||||
Sbjct 15620 GTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318760027683654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |