Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3846 95.1 8e-15 >seq3846 Length=171336 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || ||||| || |||||||| || || || | || ||| || Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| ||| ||| || ||||| |||||||| | || || || || || || | Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 16021 Query 33281 AT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || ||||| |||| ||| ||| |||||| || | ||| |||| || || ||| Sbjct 16022 ATTTTCGCCT---TTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTT 16078 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || |||||||||||||| Sbjct 16079 TTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 91.5 bits (100), Expect = 9e-14 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217 || |||| ||| || || || || ||||| || ||||| |||||||| | || || Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---T 33274 || | ||||||||| ||| || | || || ||||| | || ||||||||||| | Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 | | | | || |||||| | | ||| |||||| || | || |||| || || Sbjct 15563 TGGATTTTTGC---TTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATG 15619 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || |||||||| || || ||||||||||| Sbjct 15620 GTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318760027683654