Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 158 3e-33
seq3919 114 3e-20
seq713 87.8 4e-12
>seq3846
Length=171336
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | || |||||||| | || || || || ||||||||||||||
Sbjct 15197 ATACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCG 15256
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| || ||||||||||||||||||| ||||| || || ||
Sbjct 15257 GAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGT 15316
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||| || || || ||||| |||||||| || || |||| ||||| | ||
Sbjct 15317 GGGATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCG 15376
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||||| ||||| |||||||| ||||| ||||| || |||||
Sbjct 15377 ACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| ||||| || | ||| |||| |||||| || |||||||| |||||||| |||||
Sbjct 16109 ATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCC 16168
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | ||| | |||||||| || || || || || ||||| | | ||| ||||| |||
Sbjct 16169 GACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGA 16228
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||| ||||| || ||||||||||| ||||||||||| | || ||| | ||
Sbjct 16229 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCG 16288
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | || || || || ||||| || || || ||||| || |||||
Sbjct 16289 ACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| |||| ||| || || || | || |||||||| || || || |||||
Sbjct 15653 ATCCCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCC 15712
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| ||||||||||||||||| || | | ||| || || |||
Sbjct 15713 GAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGA 15772
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||| ||||| |||||||| || || || ||||| || | || || || ||
Sbjct 15773 GGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCA 15832
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | || || ||||| ||||| | |||||| ||||| || |||||
Sbjct 15833 ACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| | || |||||||| || ||||| || ||||| || |||||||| | ||||
Sbjct 15437 AGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGT 15496
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || || ||||||||||| || || | |||||| || || || || ||||||
Sbjct 15497 CCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCT 15556
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| || || || ||||||||||| || || | || ||| | || || || | |||
Sbjct 15557 TTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTA 15616
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || |||||||| || || ||||| || |||||
Sbjct 15617 ATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | |||||||| ||||| || ||||| || || ||||| | || ||
Sbjct 16582 AAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATC 16641
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || |||||||| ||||| |||| ||||| || || || || ||||| ||||| ||
Sbjct 16642 CTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTC 16701
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||||||||| |||||||| | || || || || || || || || || ||
Sbjct 16702 CTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGT 16761
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | || || || || ||||||||
Sbjct 16762 TTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| ||| || ||||| | ||||| || |||||||| || ||||| || || || |
Sbjct 14981 AGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGC 15040
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || ||||| || || || |||| |||||| || || ||||| |||||||||
Sbjct 15041 CCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCT 15100
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| || || || || || || |||||||| | || || | || ||||| | ||
Sbjct 15101 TTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTG 15160
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || | ||||| ||||| ||||||||
Sbjct 15161 ATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||||||| | || ||||| || || || ||||| || || || || | || ||
Sbjct 16810 AAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATC 16869
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || |||||||| ||||| || | ||||| || || || || ||||| ||||| ||
Sbjct 16870 TTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTC 16929
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| || || |||||||| | ||||| | ||| || || || || || ||
Sbjct 16930 CTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGT 16989
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || || | || || ||||| |||||||| ||
Sbjct 16990 CTTCCCCGTCAAGGTCTTGACAAAAATCTGCATGTT 17025
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||||||||| ||||| ||||| |||| || | |||||||| || || || |||
Sbjct 15914 GTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCA 15973
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || || ||||| ||||| || || || ||||| || || |||
Sbjct 15974 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTT 16033
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | || ||| | || || || | || || || || ||||| || ||
Sbjct 16034 ACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTC 16093
Query 104543 TTTACAAATATCTGCATT 104560
|| || || || ||||||
Sbjct 16094 TTAACGAAAATTTGCATT 16111
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || ||||||||||| || || || ||||| || || | || ||
Sbjct 16354 AAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATC 16413
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || ||||| || ||||| || | |||||| || || || || ||||| || || ||
Sbjct 16414 CTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTC 16473
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||| || || || || ||||| | || || || ||||| || || ||||||||
Sbjct 16474 TTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGT 16533
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | || || || || ||||||||
Sbjct 16534 TTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
>seq3919
Length=163912
Score = 114 bits (126), Expect = 3e-20
Identities = 133/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900
|| |||||| || | || || ||||| || | ||||| ||||| ||||||||||||
Sbjct 143402 TTCATATCTCATGTCCTGGCATTTTTCGCGGCATCGGATGGAATCGTCAACGAAAATCTA 143343
Query 268901 GTAGAGAAGTTCTGTCAAGAGGT-ACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCA 268959
|| ||| ||| | ||||| || || | | | |||||||| || |||||||| || ||
Sbjct 143342 GTCGAGCGTTTCAGCCAAGAAGTGACTG-TAACAGAAGCCAGGTGCTTTTACGGCTTTCA 143284
Query 268960 GATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
||||| || |||||| ||||||||||||||||| || | ||||| ||||| ||
Sbjct 143283 AATAGCCATGGAAAATGTTCATTCAGAGATGTACTCGCTGCTCATAGACACTTACAT 143227
>seq713
Length=327371
Score = 87.8 bits (96), Expect = 4e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||||||||| ||||| || || || |||||||| || || || ||||| || |||
Sbjct 311335 GTAGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCCTCAAGTTGCTTGCCA 311276
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
|||||||| | | ||| |||||||| || || |||
Sbjct 311275 GCAAAAATCAAACGCTGCTGATCAGGGGGAATCCCT 311240
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
||||||||||| || || |||||||| |||||||| | || ||| | ||| |||||
Sbjct 311041 CCTTCTTTATCTTGTATTTTTGCTTTCACATTTTCAATCGTGTCGGAGGCTTCCACCTCC 310982
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| || ||||| ||||| | ||||| || |||||||||||
Sbjct 310981 AATGTGATTGTCTTCCCAGTTAAAGTTTTGACGAATATCTGCAT 310938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151331675383284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |