Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3846 82.4 6e-11 >seq3846 Length=171336 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATG-AAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 |||||| |||| |||||| || | ||| ||| || | ||||||||||||||||| |||| Sbjct 15427 ACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGAT-TCCTTTTGAATGTTGTAGTCAG 15485 Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| ||| | || || |||||||| || | | || | ||||| || || | Sbjct 15486 ACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTG 15545 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | | ||| ||||| ||||| ||| || | | | || || |||| | ||| Sbjct 15546 GAATGCCTTCTTTGTCTTGGATTTT-TGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCG 15604 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || |||||||| || || ||||| ||||||||||| |||||| Sbjct 15605 ACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCATC 15655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421227978922523