Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 82.4 6e-11
>seq3846
Length=171336
Score = 82.4 bits (90), Expect = 6e-11
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATG-AAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557
|||||| |||| |||||| || | ||| ||| || | ||||||||||||||||| ||||
Sbjct 15427 ACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGAT-TCCTTTTGAATGTTGTAGTCAG 15485
Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
||| ||| | || || |||||||| || | | || | ||||| || || |
Sbjct 15486 ACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTG 15545
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676
| | | ||| ||||| ||||| ||| || | | | || || |||| | |||
Sbjct 15546 GAATGCCTTCTTTGTCTTGGATTTT-TGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCG 15604
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| | || |||||||| || || ||||| ||||||||||| ||||||
Sbjct 15605 ACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCATC 15655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421227978922523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |