Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq324 398 4e-106 seq4137 84.2 1e-11 >seq324 Length=361182 Score = 398 bits (440), Expect = 4e-106 Identities = 640/911 (70%), Gaps = 18/911 (2%) Strand=Plus/Minus Query 3410 TTTTGTGATAAAAATATTGTACATAATATATTGCATTTCAAATCTATCTTCGACAATATC 3469 || ||||| ||||| || | | || ||||| ||| || ||| | |||||||| | Sbjct 127353 TTCTGTGACGAAAATGTTCTCAAAGATGTATTGAATTCAAAGTCTGTGTTCGACAAGCTG 127294 Query 3470 GATaaaaaaaaaTTATGTGACGCCAGGGCAAGATCCAACCCATTCGAATTAGTGGGCAAA 3529 ||| ||| ||||| | || | ||||||| || ||||||||| | | | | Sbjct 127293 GATGGAAATGAATTACGGCGAGCTCGAACAAGATCAAATCCATTCGAAACAATCCGTGGA 127234 Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589 || ||||| | || | | |||||| |||||||| || || || || | ||||| Sbjct 127233 GCATTTTTCCTGAATCGTGCTGCTGTCAAAATGGCTAATATGGACAGAGCTGCTGATTTC 127174 Query 3590 GTATTTACACGATTGAATGA---TGGATC-AAATGAATTGATATATTTTGCTGACGTATG 3645 ||||| ||| || || || || ||| ||||||| | | || |||||||| | || Sbjct 127173 GTATTCACA-GAACCAAAGAATTTGCATCCAAATGAACTATTGTACTTTGCTGATATCTG 127115 Query 3646 CGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGG 3705 ||||||||| || || ||||| || ||| | || |||| ||| |||||||| ||| || Sbjct 127114 CGCTGGTCCTGGAGGGTTCAGCGAGTATGTTTTGTGGAAAAAAAAATGGAACGCCAAGGG 127055 Query 3706 TTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAACAGATTTTACG-ATAACT 3764 | |||| | || | || | |||||||||| |||| || |||||||| | || Sbjct 127054 ATTTGGTTTCACACTGCGAGGTGAAAATGATTTCAAACTCGACGAATTTTACGCAGGACC 126995 Query 3765 TTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCAC 3824 || | ||||||| || || |||||||| ||| || |||| | |||| | || Sbjct 126994 TTGTG-AAACTTTTCATCCTTATTATGGGCCGAAAGACAATGGCGACGTCTATGACCCAG 126936 Query 3825 AAAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATT 3884 ||||||||||||||||| | || | || ||| |||| |||| ||||||||| |||| | Sbjct 126935 AAAATCAGAAAGGTTTTCGGGATCTTATAATGGAAGACACCGGAGGAAAAGGGTTACACT 126876 Query 3885 TTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTAT 3944 | | ||||||||||||||| || ||||| || || ||||||||||| |||||||| || | Sbjct 126875 TCACGATGGCTGACGGTGGCTTTTCGGTCGAAGGGCAAGAAAATATTCAAGAAATATTGT 126816 Query 3945 CGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCAT-ACGAATTGGTGGT 4003 | ||| | | ||| |||| |||||| | ||||||| ||| || | | | || ||||| Sbjct 126815 CCAAACAATTATATCTGTGCCAATGTCTGGTTGCATTAATGGTCTTGAAGGAT-GGTGGC 126757 Query 4004 CATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTG 4063 |||| |||| |||| || |||||| ||||||||| ||||||||| ||| || | || ||| Sbjct 126756 CATTTTGTTGTCAAGTTATTCGATCTATTTACACATTTTAGTGCAGGTCTAATATACTTG 126697 Query 4064 ATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAAT 4123 |||||| | | ||| |||| || || ||||| || || ||||||| || || || ||| Sbjct 126696 ATGTATCGCTGCTTTGATCGGATATGCATTTTTAAGCCTAATTCATCCCGCCCTGCTAAT 126637 Query 4124 TCTGAAAGATATTTGGTGTGTTTGAGCAAACTTTCGAACGTGTCAGACGTGATAACATAT 4183 || ||||||||||| | |||||| | |||| | |||| ||||| || ||| | || Sbjct 126636 TCAGAAAGATATTTATTATGTTTGGGTAAACGGCCAGACGTTTCAGATGTAATAGCGTAC 126577 Query 4184 TTGTCAGAAATAAACGAAAAGAT--ATC-------GACAAACGATCGTGATAACGACGTC 4234 ||||| | |||| || | | || | || | | ||| |||||||| Sbjct 126576 TTGTCTCGAGTAAATGAGCACTTGCTTCACCCCAGCAAAAGCAAAGATGACAACGACGTT 126517 Query 4235 ACACAAATAGTGTCTCTGAATGAGTTTGAATACGAAACATGTTTTAAAAAATTTTTGATC 4294 | | ||||||| | | |||||| ||| |||| | || ||| || || | ||| ||| Sbjct 126516 TTAGAGCTAGTGTCGCCAAGTGAGTTAGAAAACGAGAAATATTTCAAGAATTATTTAATC 126457 Query 4295 GATTCAAACAA 4305 | || ||||| Sbjct 126456 AAGTCCAACAA 126446 >seq4137 Length=101537 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 5897 AATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAG 5956 |||| ||||| || | || || |||||| ||||| |||| ||| | || || |||| Sbjct 79808 AATC-TGGGGAGGACTTCCCGACGGCCAGATCTGTGCCGCTGTTCCTGAGGGAGGCAAAG 79750 Query 5957 ACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCG 6016 |||| ||||| |||||||| ||||| || | | || || | |||||| ||| Sbjct 79749 ACGCCTGCCAGGGTGATTCTGGTGGTCCCCTCGCCATCAGCGGACGTCTCGCTGGTGTCG 79690 Query 6017 TGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGC 6076 | || |||||||| ||||| | || | ||||||||||| | ||||| || |||| Sbjct 79689 TTTCCTGGGGTAACGGATGCGCCCGCGCTGGATGGCCCGGTGTATACACCGAGGTCGCTT 79630 Query 6077 CGTTCCGACACTGGAT 6092 | | ||| |||||| Sbjct 79629 CCTACCGCAGCTGGAT 79614 Score = 82.4 bits (90), Expect = 4e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 5902 TGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAGACGCA 5961 ||||| || | ||||| ||||| ||||| || ||| | || || ||||| Sbjct 66873 TGGGGAGGACTTCCAGACGGTCAGATCTGTGCCGCGTATCCTGAGGGAGGCTTCGACGCT 66814 Query 5962 TGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATA-ACCGCTTAGCTGGTATCGTGTC 6020 ||||| ||||| || || || || | | ||||| | ||| ||||||||||| || Sbjct 66813 TGCCAGGGTGACTCTGGCGGTCCTCTTGCGATCGATGGAGTTCTT-GCTGGTATCGTTTC 66755 Query 6021 ATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTT 6080 |||||||| ||||| | ||| | ||||||||||| | |||||| ||| |||| | | Sbjct 66754 CTGGGGTAACGGATGCGCTCGATCTGGATGGCCCGGTGTTTACACCGAAGTCGCTTCCTA 66695 Query 6081 CCGACACTGGAT 6092 ||| ||||||| Sbjct 66694 CCGCGACTGGAT 66683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276538355242069