Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1890 309 2e-79 seq1792 196 3e-45 seq1629 159 2e-34 seq2324 147 1e-30 seq1180 141 5e-29 seq4269 123 1e-23 seq457 122 5e-23 seq4491 116 2e-21 >seq1890 Length=601749 Score = 309 bits (342), Expect = 2e-79 Identities = 188/198 (95%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 72142 GGCGTTTCGCGTCTTGAATCTCTCGTACGGATGTAAAGCCTCGTCGAGTACGTCATCTTC 72201 ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| Sbjct 524994 GGCGTTTCGCGTCTTGAATCTCTGGTACGGATGTAAAGCCTCGTCGAGTTCCTCATCTTC 525053 Query 72202 CTCGTACACATCGATCGGAACCGACAACGTTTTACTCCAACTTATAACCGCGGCACCGAT 72261 |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| Sbjct 525054 CTCGTACACATCGATCGGAACCGACAACGTTTTACTCCGACTTATCAATGCGGCACCGAT 525113 Query 72262 TCGCCTGTGGTCCAACATAACGAAGGAATCGTATCGGGCTTGGTGAACCGCAATCACCGA 72321 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 525114 TCGCCTGTGGTCCAACATAACGAAGTAATCGTATCGGGCTGGGTGAACCGCAATCACCGA 525173 Query 72322 ATCTCCTTTGCCAGCCTT 72339 |||||| ||||||||||| Sbjct 525174 ATCTCC-TTGCCAGCCTT 525190 >seq1792 Length=6429 Score = 196 bits (216), Expect = 3e-45 Identities = 161/197 (82%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 72142 GGCGTTTCGCGTCTTGAATCTCTCGTACGGATGTAAAGCCTCGTCGAGTACGTCATCTTC 72201 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || Sbjct 874 GGCGTTTCGCGTCTTAAATCGCTCGTACGGATGTAAAGCCTCGTCGAGTACGTCGTTCTC 815 Query 72202 CTCGTACACATCGATCGGAACCGACAACGTTTTACTCCAACTTATAACCGCGGCACCGAT 72261 ||||||||||| || ||||| ||||||| |||| |||||| || || || |||| Sbjct 814 CTCGTACACATGCATTCGAACCATTAACGTTTCACTCTGACTTATCACTGCTGCGGCGAT 755 Query 72262 TCGCCTGTGGTCCAACATAACGAAGGAATCGTATCGGGCTTGGTGAACCGCAATCACCGA 72321 |||||||||||||| | | ||||||||| ||| || | ||| ||||||||||| | Sbjct 754 TCGCCTGTGGTCCAMYACGAYCCAGGAATCGTCTCGAGCATCGTGCACCGCAATCACGGG 695 Query 72322 ATCTCCTTTGCCAGCCT 72338 |||||| ||||||||| Sbjct 694 ATCTCC-CTGCCAGCCT 679 Score = 93.3 bits (102), Expect = 2e-14 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 72142 GGCGTTTCGCGTCTTGAATCTCTCGTACGGATGTAAAGCCTCGTCGAGTACGTC 72195 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 266 GGCGTTTCGCGTCTTGAATCGCTCGTACGGATGTAAAGCCTCGTCGAGTACGTC 213 >seq1629 Length=6580 Score = 159 bits (176), Expect = 2e-34 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 72142 GGCGTTTCGCGTCTTGAATCTCTCGTACGGATGTAAAGCCTCGTCGAGTACGTCATCTTC 72201 |||||||||||||||||||| |||||||||||| |||||||||| |||||||| | || Sbjct 6415 GGCGTTTCGCGTCTTGAATCGCTCGTACGGATGYRAAGCCTCGTCRAGTACGTCGTTCTC 6474 Query 72202 CTCGTACACATCGATCGGAACCGACAACGTTTTACTCCAACTTATAACCGCGGCACCGAT 72261 ||||||||||| || ||||| ||||||| |||| |||||| || || || |||| Sbjct 6475 CTCGTACACATGCATTCGAACCATTAACGTTTCACTCTGACTTATCACTGCTGCGGCGAT 6534 Query 72262 TCGCCTGTGGTCCAACATAACGAAGGAATCGTATCGGGCTTGGTG 72306 |||||||||||||| | || ||||||||| ||| || | ||| Sbjct 6535 TCGCCTGTGGTCCACTACGACCCAGGAATCGTCTCGAGCATCGTG 6579 >seq2324 Length=245612 Score = 147 bits (162), Expect = 1e-30 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 71155 GTCCGAATAAACGACGCTATCTTCTATCTGTAATTTCTTTCTGCTCCTTCGGGTGACACA 71214 || || ||||||| | |||||||||||| |||||||||||||||||||||||| ||| | Sbjct 228512 GTTCGGATAAACGGGGTTATCTTCTATCTATAATTTCTTTCTGCTCCTTCGGGTCACATA 228453 Query 71215 TGAAAAGCTTTAAATACCGCGCATATCGACGCCTAGTCATAGTCGATCA 71263 || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 228452 TGGAAAGCTTTAAATACCGCGCATATCGACGCCTATCCATAGTCGATCA 228404 Score = 138 bits (152), Expect = 6e-28 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 71155 GTCCGAATAAACGACGCTATCTTCTATCTGTAATTTCTTTCTGCTCCTTCGGGTGACACA 71214 || || ||||||| | |||| | ||||||||||||||||||||||||| |||| ||||| Sbjct 238138 GTTCGGATAAACGGGGTTATCATTTATCTGTAATTTCTTTCTGCTCCTTTGGGTCACACA 238079 Query 71215 TGAAAAGCTTTAAATACCGCGCATATCGACGCCTAGTCATAGTCGATCA 71263 || |||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 238078 TGGAAAGCTTTAAATACCGCGCATATCGACGCCTATCCATGGTCGATCA 238030 >seq1180 Length=303968 Score = 141 bits (156), Expect = 5e-29 Identities = 133/172 (77%), Gaps = 17/172 (10%) Strand=Plus/Plus Query 11376 ACGTGTATTTGACACATTATTTGTT-RTATTTCTARATCTACAAGAA---------TCCA 11425 |||| ||||| |||||||||||| ||| | || ||||| ||| | || | Sbjct 44908 ACGTCCATTTGGCACATTATTTGTCCATATCTATAAATCTAGAAGGAATTTACACATCAA 44967 Query 11426 GGGAAATATAGAATTAAT-------AAAAAATCAAATTGGCCCATGAAAGGATCGAACCT 11478 |||| ||||||||| || ||||||| || |||||||||| |||||||||| Sbjct 44968 GGGAGATATAGAATGAAATGGGATAAAAAAATTAACCTGGCCCATGAGGGGATCGAACCC 45027 Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 45028 GCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 45079 Score = 127 bits (140), Expect = 1e-24 Identities = 83/91 (91%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 47203 AAAAA--AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 47146 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 |||| |||||||||||||||||||||||||| Sbjct 47145 CTCTAACCAACTGAGCTAATGGGCCGTCGAC 47115 Score = 123 bits (136), Expect = 1e-23 Identities = 91/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11430 AATATAGAATT-AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| ||| ||| || |||||| ||| |||||||||| |||||||||| |||||||| Sbjct 51521 AATTTAGCATTGAAGAAAAAAAATAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTC 51462 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 51461 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 51418 >seq4269 Length=448611 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 361494 AAGAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 361437 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 361436 GACGCTCTAACCAACTGAGCTAATGGGCC 361408 >seq457 Length=24920 Score = 122 bits (134), Expect = 5e-23 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 8686 AATAAAAAAGTATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 8627 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||||||||||||||||||||| Sbjct 8626 GACGCTCTAACCAACTGAGCTAATGGGCCGT 8596 >seq4491 Length=410418 Score = 116 bits (128), Expect = 2e-21 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 208549 TAAAAAGTATATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 208490 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 208489 CGCTCTAACCAACTGAGCTAATGGGCCG 208462 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 189259 AAAAATTCAC--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 189202 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 189201 GCTCTAACCAACTGAGCTAATGGGCC 189176 Lambda K H 0.637 0.409 0.917 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261476785542748