Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 143 2e-29
seq4480 93.3 4e-14
seq2212 93.3 4e-14
>seq3846
Length=171336
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| || | |||||||||||| || | |||||||||| | |||| | ||||||
Sbjct 16586 ACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCG 16645
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|||||||||||| ||||||||||||| ||||| ||||| || || || |||||||| |
Sbjct 16646 AGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGG 16705
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| ||||| || || | | ||||||| || || |||| |||||||||||
Sbjct 16706 ATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTG 16765
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | || ||||| |||||||||||
Sbjct 16766 CCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 127 bits (140), Expect = 2e-24
Identities = 174/241 (72%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||| ||||||| ||| | || || || || || ||||| ||||| |
Sbjct 16100 AAAATTTGCATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATA 16159
Query 94829 TTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || || || ||| || | || || ||||| || ||| | || || || | |
Sbjct 16160 TTGTAGTCCGACAAAGTACGTCCG--TCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCT 16217
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
|||||||||||||||| || |||||||| | ||| |||||||| || | | |||||
Sbjct 16218 GCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGT 16277
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | | ||||| || | |||||||||||| ||||| || || || |||||||| ||||
Sbjct 16278 CGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCA 16337
Query 95007 T 95007
|
Sbjct 16338 T 16338
Score = 120 bits (132), Expect = 3e-22
Identities = 174/242 (72%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||| | || | || |||| || || || ||||||||||| |
Sbjct 15415 AAAAATTTGCATACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAAT 15474
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
||| || || || || ||| | ||| || ||||| ||||| ||||||| | ||
Sbjct 15475 GTTGTAGTCAGACA-AG-GTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGC 15532
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| || ||||| ||||| ||||||||||| | |||||||| || ||| | | |||
Sbjct 15533 TGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTG 15592
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | | ||||| || | || |||||||| ||||||||||| |||||||| || |||
Sbjct 15593 TCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGC 15652
Query 95006 AT 95007
||
Sbjct 15653 AT 15654
Score = 116 bits (128), Expect = 3e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| ||||||||||| | |||||||||| | ||| | ||| || |||||||||||
Sbjct 16826 GTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 16885
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
||||||| ||||| ||||| ||||| ||||| || |||||||| | ||| || |||||
Sbjct 16886 GCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTC 16945
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| ||| || |||| || || || | |||||||| || || || | ||
Sbjct 16946 ACATTTTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTC 17005
Query 94991 TTCACAAAGATCTGCATGCTTA 95012
|| ||||| ||||||||| |||
Sbjct 17006 TTGACAAAAATCTGCATGTTTA 17027
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| || |||||||| | ||||| ||| | ||| ||| ||||||||||||||
Sbjct 15230 GTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCA 15289
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
|||| |||||||| ||||| ||||| || || || || ||||| | ||||||||| ||
Sbjct 15290 GCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTC 15349
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
||| | | || |||| ||||| || | || || || |||||||||||||||
Sbjct 15350 ACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTT 15409
Query 94991 TTCACAAAGATCTGCAT 95007
|| ||||| || |||||
Sbjct 15410 TTGACAAAAATTTGCAT 15426
Score = 113 bits (124), Expect = 4e-20
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||||| || || | || | ||||| || ||||| ||||| |
Sbjct 15643 AAAAATTTGCATCCCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGAT 15702
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
||| || || | |||| | ||| || || |||||||| ||||||| || | ||
Sbjct 15703 GTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTG 15762
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
||| ||||||||||| || |||||||| | |||||| ||||| || | | ||||||
Sbjct 15763 CTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTC 15822
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || | ||||| || |||||||| | ||||| ||||| || |||||
Sbjct 15823 CGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 109 bits (120), Expect = 5e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
|||| || | |||||| ||||| || | ||| || || | | || || | ||| |
Sbjct 14990 ACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTC--TGAAAGGGTACGCCCATCTT 15047
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
|||||||||| || | || ||||| || ||||| ||||||||||| ||||||||||| |
Sbjct 15048 CCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTT 15107
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
||||| |||||||| | | ||||||| || || || | ||||| ||||
Sbjct 15108 GGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTT 15167
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || | ||||| ||||||||||||||
Sbjct 15168 TGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 102 bits (112), Expect = 7e-17
Identities = 169/242 (70%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || || || | | ||| | |||||||| | ||||||||| || || |
Sbjct 15871 AAAAATTTGCATCCCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGAT 15930
Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
|| || || | ||| || | || || ||||| || || ||||||| || |
Sbjct 15931 ATTGTAGTC--TGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGC 15988
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||| ||||||||||| || || ||||| | |||||| ||||| || | | ||||
Sbjct 15989 TGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTG 16048
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | | || || || | |||||||||||| ||||| ||||| || || || || |||
Sbjct 16049 TCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGC 16108
Query 95006 AT 95007
||
Sbjct 16109 AT 16110
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| |||||||| ||| ||||||| || || ||||| ||||| || || || || ||
Sbjct 16411 ATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTT 16470
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | |||||| ||||| ||| | | ||||| | || || |||| || ||
Sbjct 16471 GTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAAT 16530
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| ||||| | || || || |||||||||||
Sbjct 16531 AGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
>seq4480
Length=409792
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| || ||||| ||| ||||||| | || ||||| |||||||| || || |||||
Sbjct 402829 ATCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTT 402770
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||||| |||||||| ||| || || | || || |||| |||||
Sbjct 402769 GTCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGAT 402710
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || || || || || |||||||||||
Sbjct 402709 GGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 402674
>seq2212
Length=252600
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| || ||||| ||| ||||||| | || ||||| |||||||| || || |||||
Sbjct 250323 ATCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTT 250382
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||||| |||||||| ||| || || | || || |||| |||||
Sbjct 250383 GTCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGAT 250442
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || || || || || |||||||||||
Sbjct 250443 GGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 250478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448265854736280
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