Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3846 143 2e-29 seq4480 93.3 4e-14 seq2212 93.3 4e-14 >seq3846 Length=171336 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||||||||| || | |||||||||| | |||| | |||||| Sbjct 16586 ACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCG 16645 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||||||| ||||||||||||| ||||| ||||| || || || |||||||| | Sbjct 16646 AGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGG 16705 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||| || || | | ||||||| || || |||| ||||||||||| Sbjct 16706 ATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTG 16765 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||| ||||||||||| Sbjct 16766 CCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 127 bits (140), Expect = 2e-24 Identities = 174/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| ||||||| ||| | || || || || || ||||| ||||| | Sbjct 16100 AAAATTTGCATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATA 16159 Query 94829 TTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || || ||| || | || || ||||| || ||| | || || || | | Sbjct 16160 TTGTAGTCCGACAAAGTACGTCCG--TCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCT 16217 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||||||||| || |||||||| | ||| |||||||| || | | ||||| Sbjct 16218 GCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGT 16277 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | |||||||||||| ||||| || || || |||||||| |||| Sbjct 16278 CGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCA 16337 Query 95007 T 95007 | Sbjct 16338 T 16338 Score = 120 bits (132), Expect = 3e-22 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| | || | || |||| || || || ||||||||||| | Sbjct 15415 AAAAATTTGCATACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAAT 15474 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || || || ||| | ||| || ||||| ||||| ||||||| | || Sbjct 15475 GTTGTAGTCAGACA-AG-GTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGC 15532 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||| ||||| ||||||||||| | |||||||| || ||| | | ||| Sbjct 15533 TGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTG 15592 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | ||||| || | || |||||||| ||||||||||| |||||||| || ||| Sbjct 15593 TCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGC 15652 Query 95006 AT 95007 || Sbjct 15653 AT 15654 Score = 116 bits (128), Expect = 3e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | |||||||||| | ||| | ||| || ||||||||||| Sbjct 16826 GTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 16885 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| ||||| ||||| ||||| ||||| || |||||||| | ||| || ||||| Sbjct 16886 GCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTC 16945 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| || |||| || || || | |||||||| || || || | || Sbjct 16946 ACATTTTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTC 17005 Query 94991 TTCACAAAGATCTGCATGCTTA 95012 || ||||| ||||||||| ||| Sbjct 17006 TTGACAAAAATCTGCATGTTTA 17027 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||||| ||| | ||| ||| |||||||||||||| Sbjct 15230 GTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCA 15289 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| |||||||| ||||| ||||| || || || || ||||| | ||||||||| || Sbjct 15290 GCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTC 15349 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | || |||| ||||| || | || || || ||||||||||||||| Sbjct 15350 ACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTT 15409 Query 94991 TTCACAAAGATCTGCAT 95007 || ||||| || ||||| Sbjct 15410 TTGACAAAAATTTGCAT 15426 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||| || || | || | ||||| || ||||| ||||| | Sbjct 15643 AAAAATTTGCATCCCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGAT 15702 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | |||| | ||| || || |||||||| ||||||| || | || Sbjct 15703 GTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTG 15762 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||||||||| || |||||||| | |||||| ||||| || | | |||||| Sbjct 15763 CTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTC 15822 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| || |||||||| | ||||| ||||| || ||||| Sbjct 15823 CGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| || | |||||| ||||| || | ||| || || | | || || | ||| | Sbjct 14990 ACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTC--TGAAAGGGTACGCCCATCTT 15047 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||||||||| || | || ||||| || ||||| ||||||||||| ||||||||||| | Sbjct 15048 CCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTT 15107 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| |||||||| | | ||||||| || || || | ||||| |||| Sbjct 15108 GGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTT 15167 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||||| |||||||||||||| Sbjct 15168 TGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 102 bits (112), Expect = 7e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | | ||| | |||||||| | ||||||||| || || | Sbjct 15871 AAAAATTTGCATCCCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGAT 15930 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || | ||| || | || || ||||| || || ||||||| || | Sbjct 15931 ATTGTAGTC--TGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGC 15988 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||||||||| || || ||||| | |||||| ||||| || | | |||| Sbjct 15989 TGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTG 16048 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | |||||||||||| ||||| ||||| || || || || ||| Sbjct 16049 TCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGC 16108 Query 95006 AT 95007 || Sbjct 16109 AT 16110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| |||||||| ||| ||||||| || || ||||| ||||| || || || || || Sbjct 16411 ATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTT 16470 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||| ||| | | ||||| | || || |||| || || Sbjct 16471 GTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAAT 16530 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | || || || ||||||||||| Sbjct 16531 AGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 >seq4480 Length=409792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| ||||||| | || ||||| |||||||| || || ||||| Sbjct 402829 ATCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTT 402770 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| |||||||| ||| || || | || || |||| ||||| Sbjct 402769 GTCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGAT 402710 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || || ||||||||||| Sbjct 402709 GGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 402674 >seq2212 Length=252600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| ||||||| | || ||||| |||||||| || || ||||| Sbjct 250323 ATCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTT 250382 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| |||||||| ||| || || | || || |||| ||||| Sbjct 250383 GTCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGAT 250442 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || || ||||||||||| Sbjct 250443 GGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 250478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448265854736280