Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006636.1 Length=15876 Score E Sequences producing significant alignments: (Bits) Value seq613 107 2e-19 seq2280 98.7 1e-16 seq2591 96.9 4e-16 seq71 96.9 4e-16 seq287 89.7 5e-14 seq1 89.7 5e-14 seq451 87.8 2e-13 >seq613 Length=338997 Score = 107 bits (118), Expect = 2e-19 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 3791 CAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACGATAAGCATGAAAGGA 3850 |||||||||||| ||||| ||| | | |||| ||||||||| | ||| | || | Sbjct 164032 CAAGTGTGCGCATTTAAGGATTTAGGTTCGTGTAAAAATTAAACAAAAAGAAATAAGGAC 164091 Query 3851 AAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATTAAATTAATAAATAAA 3910 ||| || ||| | ||||| || |||||| || ||||||||||||||| ||||| Sbjct 164092 AAAAGAACCCATGCATATGATAAAGCATTTATTGAACTAATAATTAAATTAAGTAATAAC 164151 Query 3911 GTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAATCCGAATGATTCTAAATGCTTA 3970 ||||||||| ||| || | || ||||| | ||||| || |||| |||||| | Sbjct 164152 ACATAAAACTTTGACAATTGGAAAGAAAAAATGGTTAATGAAAAAAATTCAAAATGCGCA 164211 Query 3971 CACTTTCCCCGTACTGAGGGTAAGTGT 3997 | ||| |||| || |||||||||| Sbjct 164212 CGCTTGACCCGCTTTGCGGGTAAGTGT 164238 >seq2280 Length=238480 Score = 98.7 bits (108), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 3776 TAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACG 3835 |||||| | ||| ||||||||||||| ||| ||| | | |||| ||||||||| Sbjct 203951 TAGAGTCGTTCGGGTCAAGTGTGCGCAC--AAGGATTTAGGTTCGTGTAAAAATTAAACA 204008 Query 3836 ATAAGCATGAAAGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATT 3895 | ||| | || | ||| || ||| | ||||| || |||||| || |||||||| Sbjct 204009 AAAAGAAATAAGGACAAAAGAACCCATGCATATGATAAAGCATTTATTGAACTAATAATT 204068 Query 3896 AAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAATCCGAAT 3955 ||||||| ||||| ||||||||| | | || | || ||||| | ||||| || Sbjct 204069 AAATTAAGTAATAACACATAAAACTTTGAYAATTRGAAAGAAAAAATGGTTAATGAAAAA 204128 Query 3956 GATTCTAAATGCTTACACTTTCCCCGTACTGAGGGTAAGTGT 3997 |||| ||| | | |||||| |||| || |||||||||| Sbjct 204129 AATTCAAAACG-TCACACTTGACCCGCTTTGCGGGTAAGTGT 204169 >seq2591 Length=221707 Score = 96.9 bits (106), Expect = 4e-16 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 3775 ATAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAAC 3834 ||||||| | ||| |||||||||||||||||| ||| | | |||| ||||| ||| Sbjct 82682 ATAGAGTCGTTCGGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTAAAAATTGAAC 82623 Query 3835 GATAAGCATGAAAGGAAAATAAAAAT-ATGTCTCTGATAGAGTATTTATGGAGGTAATAA 3893 | ||| | ||||| || | || ||| | ||||| ||||||||| || |||||| Sbjct 82622 AA-AAGGAAATAAGGACAAAAGAACCCATGCATATGATAAAGTATTTATTGAACTAATAA 82564 Query 3894 TTAAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaa 3940 ||||||||| ||||| ||||||||| ||| || ||||| |||| Sbjct 82563 TTAAATTAAGTAATAACACATAAAACTTTGACAATT-GGAAAGAAAA 82518 >seq71 Length=42948 Score = 96.9 bits (106), Expect = 4e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 5195 AATTAATAGTAATAAAGGTATAGTCCAGCTTTACAATAGTTGTATCGTAAATTTTCCCAG 5254 ||||| | ||||| || |||||||||||||| |||||||||||||| ||||||||||||| Sbjct 5154 AATTATTGGTAATGAAAGTATAGTCCAGCTTCACAATAGTTGTATCATAAATTTTCCCAG 5213 Query 5255 AAATTTTTCCCTGTGT 5270 |||||||| | |||| Sbjct 5214 AAATTTTTTTCCGTGT 5229 >seq287 Length=31124 Score = 89.7 bits (98), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 3775 ATAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAAC 3834 ||||||| | ||| |||||||||||||||||| ||| | | ||||| ||||||||| Sbjct 16948 ATAGAGTCGTTCGGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTCAAAATTAAAC 17007 Query 3835 GATAAGCATGAAAGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAAT 3894 | ||| | || | ||| || | | | |||| || |||||| || ||||||| Sbjct 17008 AAAAAGAAATAAGGACAAAAGAACCCAAGCATATGATGAAGCATTTATTGAACTAATAAT 17067 Query 3895 TAAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaa 3940 ||||| || ||||| ||||||||| ||| || ||||| |||| Sbjct 17068 TAAATCAAGTAATAAGACATAAAACTTTGACAATT-GGAAAGAAAA 17112 >seq1 Length=1629114 Score = 89.7 bits (98), Expect = 5e-14 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 3776 TAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACG 3835 |||||| | ||| |||||||||||||||||| ||| | | |||| ||||||||| Sbjct 50451 TAGAGTCGTTCGGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTAAAAATTAAACA 50510 Query 3836 ATAAGCATGAAAGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATT 3895 | ||| | || | ||| || ||| | ||||| || |||||| | |||||||| Sbjct 50511 AAAAGAAATAAGGACAAAAGAACCCATGCATATGATAAAGCATTTATTGCACTAATAATT 50570 Query 3896 AAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAAT 3949 ||||||| ||||| |||||| || ||| || | || ||||| | ||||| Sbjct 50571 AAATTAAGTAATAACACATAAAACGTTGACAATTAGAAAGAAAAAATGGTTAAT 50624 >seq451 Length=29264 Score = 87.8 bits (96), Expect = 2e-13 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 3787 GGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACGATAAGCATGAA 3846 ||| |||||||||||||||||| ||| | | |||| ||||||||| | ||| | || Sbjct 27042 GGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTAAAAATTAAACAAAAAGAAATAA 26983 Query 3847 AGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATTAAATTAATAAA 3906 | ||| || ||| | ||||| || |||||| || ||||||||||||||| || Sbjct 26982 GGACAAAAGAACCCATGCATATGATAAAGCATTTATTGAACTAATAATTAAATTAAGTAA 26923 Query 3907 TAAAGTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAAT 3949 || ||||||||| ||| || || ||||| | ||||| Sbjct 26922 TAGCACGTAAAACTTTGACAATTGAAAAGAAAAAATGGTTAAT 26880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50682149327511