Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006636.1
Length=15876
Score E
Sequences producing significant alignments: (Bits) Value
seq613 107 2e-19
seq2280 98.7 1e-16
seq2591 96.9 4e-16
seq71 96.9 4e-16
seq287 89.7 5e-14
seq1 89.7 5e-14
seq451 87.8 2e-13
>seq613
Length=338997
Score = 107 bits (118), Expect = 2e-19
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 3791 CAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACGATAAGCATGAAAGGA 3850
|||||||||||| ||||| ||| | | |||| ||||||||| | ||| | || |
Sbjct 164032 CAAGTGTGCGCATTTAAGGATTTAGGTTCGTGTAAAAATTAAACAAAAAGAAATAAGGAC 164091
Query 3851 AAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATTAAATTAATAAATAAA 3910
||| || ||| | ||||| || |||||| || ||||||||||||||| |||||
Sbjct 164092 AAAAGAACCCATGCATATGATAAAGCATTTATTGAACTAATAATTAAATTAAGTAATAAC 164151
Query 3911 GTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAATCCGAATGATTCTAAATGCTTA 3970
||||||||| ||| || | || ||||| | ||||| || |||| |||||| |
Sbjct 164152 ACATAAAACTTTGACAATTGGAAAGAAAAAATGGTTAATGAAAAAAATTCAAAATGCGCA 164211
Query 3971 CACTTTCCCCGTACTGAGGGTAAGTGT 3997
| ||| |||| || ||||||||||
Sbjct 164212 CGCTTGACCCGCTTTGCGGGTAAGTGT 164238
>seq2280
Length=238480
Score = 98.7 bits (108), Expect = 1e-16
Identities = 156/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 3776 TAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACG 3835
|||||| | ||| ||||||||||||| ||| ||| | | |||| |||||||||
Sbjct 203951 TAGAGTCGTTCGGGTCAAGTGTGCGCAC--AAGGATTTAGGTTCGTGTAAAAATTAAACA 204008
Query 3836 ATAAGCATGAAAGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATT 3895
| ||| | || | ||| || ||| | ||||| || |||||| || ||||||||
Sbjct 204009 AAAAGAAATAAGGACAAAAGAACCCATGCATATGATAAAGCATTTATTGAACTAATAATT 204068
Query 3896 AAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAATCCGAAT 3955
||||||| ||||| ||||||||| | | || | || ||||| | ||||| ||
Sbjct 204069 AAATTAAGTAATAACACATAAAACTTTGAYAATTRGAAAGAAAAAATGGTTAATGAAAAA 204128
Query 3956 GATTCTAAATGCTTACACTTTCCCCGTACTGAGGGTAAGTGT 3997
|||| ||| | | |||||| |||| || ||||||||||
Sbjct 204129 AATTCAAAACG-TCACACTTGACCCGCTTTGCGGGTAAGTGT 204169
>seq2591
Length=221707
Score = 96.9 bits (106), Expect = 4e-16
Identities = 124/167 (74%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 3775 ATAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAAC 3834
||||||| | ||| |||||||||||||||||| ||| | | |||| ||||| |||
Sbjct 82682 ATAGAGTCGTTCGGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTAAAAATTGAAC 82623
Query 3835 GATAAGCATGAAAGGAAAATAAAAAT-ATGTCTCTGATAGAGTATTTATGGAGGTAATAA 3893
| ||| | ||||| || | || ||| | ||||| ||||||||| || ||||||
Sbjct 82622 AA-AAGGAAATAAGGACAAAAGAACCCATGCATATGATAAAGTATTTATTGAACTAATAA 82564
Query 3894 TTAAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaa 3940
||||||||| ||||| ||||||||| ||| || ||||| ||||
Sbjct 82563 TTAAATTAAGTAATAACACATAAAACTTTGACAATT-GGAAAGAAAA 82518
>seq71
Length=42948
Score = 96.9 bits (106), Expect = 4e-16
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 5195 AATTAATAGTAATAAAGGTATAGTCCAGCTTTACAATAGTTGTATCGTAAATTTTCCCAG 5254
||||| | ||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 5154 AATTATTGGTAATGAAAGTATAGTCCAGCTTCACAATAGTTGTATCATAAATTTTCCCAG 5213
Query 5255 AAATTTTTCCCTGTGT 5270
|||||||| | ||||
Sbjct 5214 AAATTTTTTTCCGTGT 5229
>seq287
Length=31124
Score = 89.7 bits (98), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 1/166 (1%)
Strand=Plus/Plus
Query 3775 ATAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAAC 3834
||||||| | ||| |||||||||||||||||| ||| | | ||||| |||||||||
Sbjct 16948 ATAGAGTCGTTCGGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTCAAAATTAAAC 17007
Query 3835 GATAAGCATGAAAGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAAT 3894
| ||| | || | ||| || | | | |||| || |||||| || |||||||
Sbjct 17008 AAAAAGAAATAAGGACAAAAGAACCCAAGCATATGATGAAGCATTTATTGAACTAATAAT 17067
Query 3895 TAAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaa 3940
||||| || ||||| ||||||||| ||| || ||||| ||||
Sbjct 17068 TAAATCAAGTAATAAGACATAAAACTTTGACAATT-GGAAAGAAAA 17112
>seq1
Length=1629114
Score = 89.7 bits (98), Expect = 5e-14
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 3776 TAGAGTGATGTGGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACG 3835
|||||| | ||| |||||||||||||||||| ||| | | |||| |||||||||
Sbjct 50451 TAGAGTCGTTCGGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTAAAAATTAAACA 50510
Query 3836 ATAAGCATGAAAGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATT 3895
| ||| | || | ||| || ||| | ||||| || |||||| | ||||||||
Sbjct 50511 AAAAGAAATAAGGACAAAAGAACCCATGCATATGATAAAGCATTTATTGCACTAATAATT 50570
Query 3896 AAATTAATAAATAAAGTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAAT 3949
||||||| ||||| |||||| || ||| || | || ||||| | |||||
Sbjct 50571 AAATTAAGTAATAACACATAAAACGTTGACAATTAGAAAGAAAAAATGGTTAAT 50624
>seq451
Length=29264
Score = 87.8 bits (96), Expect = 2e-13
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 3787 GGGGCAAGTGTGCGCACTTAAGCATTAAAACTAGTGTCTAAATTAAACGATAAGCATGAA 3846
||| |||||||||||||||||| ||| | | |||| ||||||||| | ||| | ||
Sbjct 27042 GGGTCAAGTGTGCGCACTTAAGGATTTAGGTTCGTGTAAAAATTAAACAAAAAGAAATAA 26983
Query 3847 AGGAAAATAAAAATATGTCTCTGATAGAGTATTTATGGAGGTAATAATTAAATTAATAAA 3906
| ||| || ||| | ||||| || |||||| || ||||||||||||||| ||
Sbjct 26982 GGACAAAAGAACCCATGCATATGATAAAGCATTTATTGAACTAATAATTAAATTAAGTAA 26923
Query 3907 TAAAGTCTAAAACTTTAACACTTCGGaaaaaaaaCGGATTAAT 3949
|| ||||||||| ||| || || ||||| | |||||
Sbjct 26922 TAGCACGTAAAACTTTGACAATTGAAAAGAAAAAATGGTTAAT 26880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 50682149327511
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |