Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4044 178 2e-40 seq4107 174 2e-39 seq2791 174 2e-39 seq36 174 2e-39 >seq4044 Length=140631 Score = 178 bits (196), Expect = 2e-40 Identities = 203/270 (75%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||| | | | | || || || ||||| || ||||| |||||||| || || Sbjct 34716 GCCAAGCGTCATAGGA-AGGTGTTGCGTGACAACATTCAGGGAATTACCAAGCCCGCAAT 34658 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| || ||||| ||| | |||||| | | || ||||||| Sbjct 34657 CCGTCGTCTGGCTCGTCGTGGCGGTGTCAAACGTATTTCTGGACTCATTTACGAAGAGAC 34598 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||| | || || | | ||| |||| |||||| || || || || Sbjct 34597 TCGTGGAGTTCTGAAAGTGTTTCTGGAAAACGTGATCCGTGATGCCGTCACTTACACAGA 34538 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | || || || ||| ||||||| | ||||| || |||||||||||||| Sbjct 34537 GCACGCTAAGAGGAAAACCGTAACCGCCATGGACGTTGTCTACGCCTTGAAACGTCAAGG 34478 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 |||| | || || || ||| ||||||| Sbjct 34477 ACGTACTCTGTACGGCTTCGGAGGTTAATC 34448 >seq4107 Length=110573 Score = 174 bits (192), Expect = 2e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| || |||||| Sbjct 73527 CTTCGTGATAACATCCAGGGAATAACCAAGCCCGCTATTCGTCGTCTGGCCCGCCGTGGT 73586 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || | |||| || || |||||||||||| ||||| ||| | ||| | || Sbjct 73587 GGAGTGAAAAGAATCTCCGGGCTGATCTATGAAGAGACTCGTGGTGTCCTAAAGGTGTTT 73646 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||||| | || ||||||||||| || | || ||||| Sbjct 73647 CTTGAGAACGTCATTCGTGATGCTGTGACTTACACCGAGCACGCCAAGAGGAAAACTGTG 73706 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| | || || || ||||||| ||||| || | |||| || |||||| Sbjct 73707 ACCGCGATGGACGTTGTATACGCTCTGAAACGACAAGGTCGCACTCTTTACGGATTTGGA 73766 Query 16694 AGTTAA 16699 ||||| Sbjct 73767 GGTTAA 73772 >seq2791 Length=212750 Score = 174 bits (192), Expect = 2e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| ||||||||||| || |||||||| |||| || ||||| Sbjct 13318 CTTCGCGACAACATCCAAGGCATCACCAAGCCGGCCATCCGTCGGTTGGCCCGACGTGGC 13377 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | | || ||||||| ||| | ||| | ||| ||||| Sbjct 13378 GGCGTCAAGCGAATCTCAGGTCTTATTTACGAAGAGACTCGCGGTGTCCTCAAGGTCTTC 13437 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||| ||| | ||| || |||||||| ||| | ||||| ||| Sbjct 13438 CTTGAGAACGTGATTCGTGACGCTGTGACCTACACGGAGCACGCGAAAAGGAAGACCGTC 13497 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| |||||||||| |||||||| || || || | | || |||||||| Sbjct 13498 ACCGCTATGGACGTCGTCTATGCCTTGAAACGCCAGGGACGCACCCTCTACGGTTTTGGC 13557 Query 16694 AGTTAA 16699 ||||| Sbjct 13558 GGTTAA 13563 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| || ||||||||||| || ||||| |||| || ||||| Sbjct 21723 CTTCGCGACAACATCCAAGGCATTACCAAGCCAGCCATTCGTCGGTTGGCCCGACGTGGC 21782 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | | || ||||||| ||| | ||| | ||| ||||| Sbjct 21783 GGCGTCAAGCGAATCTCAGGTCTCATTTACGAAGAGACTCGCGGTGTCCTCAAGGTCTTC 21842 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||| ||| | ||| || |||||||| ||| | ||||| ||| Sbjct 21843 CTTGAGAACGTGATTCGTGACGCTGTGACCTACACGGAGCACGCGAAAAGGAAGACCGTC 21902 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| |||||||||| |||||||| || || || | | |||||||| || Sbjct 21903 ACCGCTATGGACGTCGTCTATGCCTTGAAACGCCAGGGACGCACCCTCTATGGTTTCGGC 21962 Query 16694 AGTTAA 16699 ||||| Sbjct 21963 GGTTAA 21968 >seq36 Length=400867 Score = 174 bits (192), Expect = 2e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 75745 CTTCGTGACAACATCCAAGGAATCACCAAGCCTGCTATTCGGCGTCTGGCTCGTCGTGGT 75804 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||| | |||| || | |||| ||||||| ||||| ||| | || | || Sbjct 75805 GGAGTCAAAAGAATCTCCGGTCTTATCTACGAAGAGACTCGTGGCGTTCTCAAAGTGTTT 75864 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| || || ||||||||||| || | |||||||| Sbjct 75865 CTTGAGAACGTGATCCGTGATGCAGTCACTTACACCGAGCACGCCAAGAGGAAGACTGTA 75924 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | ||||| || | |||||||| || |||| | || ||||| || Sbjct 75925 ACAGCTATGGACGTAGTCTACGCTCTCAAACGTCAGGGTCGTACTCTGTACGGTTTCGGC 75984 Query 16694 AGTTAA 16699 ||||| Sbjct 75985 GGTTAA 75990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071064589439