Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006644.1 Length=16103 Score E Sequences producing significant alignments: (Bits) Value seq35 96.9 4e-16 seq4181 91.5 2e-14 seq629 87.8 2e-13 seq2070 86.0 6e-13 seq4402 84.2 2e-12 seq3991 80.6 3e-11 seq4016 78.8 1e-10 >seq35 Length=46324 Score = 96.9 bits (106), Expect = 4e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 7269 TTTTATTTATTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACA 7328 ||||| || ||||||||||||||||||||||| ||| ||||||||| || ||| |||| Sbjct 40217 TTTTAATTTTTTTTGACGTGATAACGTCTTATAAATCGATGAACACCGGCTGCATGCACG 40276 Query 7329 AATAAGTGTCCCGTTCCATCTGAGCC 7354 || ||||||| |||||| ||||||| Sbjct 40277 AAAAAGTGTCACGTTCCGCCTGAGCC 40302 >seq4181 Length=104712 Score = 91.5 bits (100), Expect = 2e-14 Identities = 93/122 (76%), Gaps = 11/122 (9%) Strand=Plus/Minus Query 7389 CTCGCGTGACGTCAGAGCTAGCAGTTAGAATATTGTTCTATAACTAATCGTTCGTGATTT 7448 |||||||||||||| |||||||| || |||| | || | | ||| || | Sbjct 11463 CTCGCGTGACGTCATAGCTAGCAATTTGAATCGTATTTT-----TCATCA------ATGT 11415 Query 7449 TTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAACAAAC 7508 |||||||||||||||||| || |||||||||||| |||| ||||||| ||||||| || Sbjct 11414 TTCTTTATGACGTTATCACGTCAAACTATCGTCCGTAAACCGACTTTACAGACAACCAAT 11355 Query 7509 TT 7510 || Sbjct 11354 TT 11353 Score = 91.5 bits (100), Expect = 2e-14 Identities = 93/122 (76%), Gaps = 11/122 (9%) Strand=Plus/Minus Query 7389 CTCGCGTGACGTCAGAGCTAGCAGTTAGAATATTGTTCTATAACTAATCGTTCGTGATTT 7448 |||||||||||||| |||||||| || |||| | || | | ||| || | Sbjct 12501 CTCGCGTGACGTCATAGCTAGCAATTTGAATCGTATTTT-----TCATCA------ATGT 12453 Query 7449 TTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAACAAAC 7508 |||||||||||||||||| || |||||||||||| |||| ||||||| ||||||| || Sbjct 12452 TTCTTTATGACGTTATCACGTCAAACTATCGTCCGTAAACCGACTTTACAGACAACCAAT 12393 Query 7509 TT 7510 || Sbjct 12392 TT 12391 >seq629 Length=23086 Score = 87.8 bits (96), Expect = 2e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 7445 ATTTTTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAAC 7504 || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 4260 ATGTTTCTTTATGACGTTATCATGTAAAACTATCGTCCGTAAACCGACTTTACAGACAAC 4201 Query 7505 AAACTT 7510 || || Sbjct 4200 CAATTT 4195 >seq2070 Length=7118 Score = 86.0 bits (94), Expect = 6e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 7278 TTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGTGT 7337 ||||||||||||||||||||||| || ||||||||| || |||||||| || |||||| Sbjct 3517 TTTTTGACGTGATAACGTCTTATACATCGATGAACACCGGCTGCACGCACGAAAAAGTGT 3458 Query 7338 CCCGTTCCATCTGAGCC 7354 | |||||| |||||| Sbjct 3457 CACGTTCCGCATGAGCC 3441 Score = 84.2 bits (92), Expect = 2e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 7445 ATTTTTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAAC 7504 || ||||||||||||||||||| ||||||||||||||| |||| |||||||||||| || Sbjct 3231 ATGTTTCTTTATGACGTTATCACGTAAAACTATCGTCCGTAAACCGACTTTATAGACGAC 3172 Query 7505 AAACTT 7510 || || Sbjct 3171 CAATTT 3166 >seq4402 Length=410039 Score = 84.2 bits (92), Expect = 2e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 7276 TATTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGT 7335 ||||||||| ||||||||||||||| ||| |||| |||| || |||||||| || |||| Sbjct 8519 TATTTTTGAAGTGATAACGTCTTATAAATCGATGTACACCGGCTGCACGCACGAAAAAGT 8578 Query 7336 GTCCCGTTCCATCTGAGCC 7354 ||| | |||| ||||||| Sbjct 8579 GTCACCTTCCGCCTGAGCC 8597 >seq3991 Length=157798 Score = 80.6 bits (88), Expect = 3e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 7279 TTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGTGTC 7338 |||||||||||||||||||||| ||| ||||||||| || ||||| || || ||||||| Sbjct 90695 TTTTGACGTGATAACGTCTTATAAATCGATGAACACCGGCTGCACGGACGAAAAAGTGTC 90636 Query 7339 CCGTTCC 7345 |||||| Sbjct 90635 ACGTTCC 90629 Score = 78.8 bits (86), Expect = 1e-10 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 7445 ATTTTTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAAC 7504 || ||||||||||||||||||| ||||||||||||||| |||| | ||||| ||||||| Sbjct 90251 ATGTTTCTTTATGACGTTATCACGTAAAACTATCGTCCGTAAACCGTCTTTACAGACAAC 90192 Query 7505 AAACTT 7510 || || Sbjct 90191 CAATTT 90186 >seq4016 Length=130156 Score = 78.8 bits (86), Expect = 1e-10 Identities = 66/81 (81%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 7279 TTTTGACGTGATA-----ACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAA 7333 ||||||||||||| ||||||||| ||| ||||||||| | |||||||| || || Sbjct 122613 TTTTGACGTGATAACGTCACGTCTTATAAATCGATGAACACCGGTTGCACGCACGAAAAA 122672 Query 7334 GTGTCCCGTTCCATCTGAGCC 7354 ||||| ||||||| ||||||| Sbjct 122673 GTGTCACGTTCCACCTGAGCC 122693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51408511338834