Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006644.1
Length=16103
Score E
Sequences producing significant alignments: (Bits) Value
seq35 96.9 4e-16
seq4181 91.5 2e-14
seq629 87.8 2e-13
seq2070 86.0 6e-13
seq4402 84.2 2e-12
seq3991 80.6 3e-11
seq4016 78.8 1e-10
>seq35
Length=46324
Score = 96.9 bits (106), Expect = 4e-16
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 7269 TTTTATTTATTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACA 7328
||||| || ||||||||||||||||||||||| ||| ||||||||| || ||| ||||
Sbjct 40217 TTTTAATTTTTTTTGACGTGATAACGTCTTATAAATCGATGAACACCGGCTGCATGCACG 40276
Query 7329 AATAAGTGTCCCGTTCCATCTGAGCC 7354
|| ||||||| |||||| |||||||
Sbjct 40277 AAAAAGTGTCACGTTCCGCCTGAGCC 40302
>seq4181
Length=104712
Score = 91.5 bits (100), Expect = 2e-14
Identities = 93/122 (76%), Gaps = 11/122 (9%)
Strand=Plus/Minus
Query 7389 CTCGCGTGACGTCAGAGCTAGCAGTTAGAATATTGTTCTATAACTAATCGTTCGTGATTT 7448
|||||||||||||| |||||||| || |||| | || | | ||| || |
Sbjct 11463 CTCGCGTGACGTCATAGCTAGCAATTTGAATCGTATTTT-----TCATCA------ATGT 11415
Query 7449 TTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAACAAAC 7508
|||||||||||||||||| || |||||||||||| |||| ||||||| ||||||| ||
Sbjct 11414 TTCTTTATGACGTTATCACGTCAAACTATCGTCCGTAAACCGACTTTACAGACAACCAAT 11355
Query 7509 TT 7510
||
Sbjct 11354 TT 11353
Score = 91.5 bits (100), Expect = 2e-14
Identities = 93/122 (76%), Gaps = 11/122 (9%)
Strand=Plus/Minus
Query 7389 CTCGCGTGACGTCAGAGCTAGCAGTTAGAATATTGTTCTATAACTAATCGTTCGTGATTT 7448
|||||||||||||| |||||||| || |||| | || | | ||| || |
Sbjct 12501 CTCGCGTGACGTCATAGCTAGCAATTTGAATCGTATTTT-----TCATCA------ATGT 12453
Query 7449 TTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAACAAAC 7508
|||||||||||||||||| || |||||||||||| |||| ||||||| ||||||| ||
Sbjct 12452 TTCTTTATGACGTTATCACGTCAAACTATCGTCCGTAAACCGACTTTACAGACAACCAAT 12393
Query 7509 TT 7510
||
Sbjct 12392 TT 12391
>seq629
Length=23086
Score = 87.8 bits (96), Expect = 2e-13
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 7445 ATTTTTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAAC 7504
|| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 4260 ATGTTTCTTTATGACGTTATCATGTAAAACTATCGTCCGTAAACCGACTTTACAGACAAC 4201
Query 7505 AAACTT 7510
|| ||
Sbjct 4200 CAATTT 4195
>seq2070
Length=7118
Score = 86.0 bits (94), Expect = 6e-13
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 7278 TTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGTGT 7337
||||||||||||||||||||||| || ||||||||| || |||||||| || ||||||
Sbjct 3517 TTTTTGACGTGATAACGTCTTATACATCGATGAACACCGGCTGCACGCACGAAAAAGTGT 3458
Query 7338 CCCGTTCCATCTGAGCC 7354
| |||||| ||||||
Sbjct 3457 CACGTTCCGCATGAGCC 3441
Score = 84.2 bits (92), Expect = 2e-12
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 7445 ATTTTTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAAC 7504
|| ||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||
Sbjct 3231 ATGTTTCTTTATGACGTTATCACGTAAAACTATCGTCCGTAAACCGACTTTATAGACGAC 3172
Query 7505 AAACTT 7510
|| ||
Sbjct 3171 CAATTT 3166
>seq4402
Length=410039
Score = 84.2 bits (92), Expect = 2e-12
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 7276 TATTTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGT 7335
||||||||| ||||||||||||||| ||| |||| |||| || |||||||| || ||||
Sbjct 8519 TATTTTTGAAGTGATAACGTCTTATAAATCGATGTACACCGGCTGCACGCACGAAAAAGT 8578
Query 7336 GTCCCGTTCCATCTGAGCC 7354
||| | |||| |||||||
Sbjct 8579 GTCACCTTCCGCCTGAGCC 8597
>seq3991
Length=157798
Score = 80.6 bits (88), Expect = 3e-11
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 7279 TTTTGACGTGATAACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAAGTGTC 7338
|||||||||||||||||||||| ||| ||||||||| || ||||| || || |||||||
Sbjct 90695 TTTTGACGTGATAACGTCTTATAAATCGATGAACACCGGCTGCACGGACGAAAAAGTGTC 90636
Query 7339 CCGTTCC 7345
||||||
Sbjct 90635 ACGTTCC 90629
Score = 78.8 bits (86), Expect = 1e-10
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 7445 ATTTTTCTTTATGACGTTATCATGTAAAACTATCGTCCTTAAATTGACTTTATAGACAAC 7504
|| ||||||||||||||||||| ||||||||||||||| |||| | ||||| |||||||
Sbjct 90251 ATGTTTCTTTATGACGTTATCACGTAAAACTATCGTCCGTAAACCGTCTTTACAGACAAC 90192
Query 7505 AAACTT 7510
|| ||
Sbjct 90191 CAATTT 90186
>seq4016
Length=130156
Score = 78.8 bits (86), Expect = 1e-10
Identities = 66/81 (81%), Gaps = 5/81 (6%)
Strand=Plus/Plus
Query 7279 TTTTGACGTGATA-----ACGTCTTATGAATTGATGAACACTAGCAGCACGCACAAATAA 7333
||||||||||||| ||||||||| ||| ||||||||| | |||||||| || ||
Sbjct 122613 TTTTGACGTGATAACGTCACGTCTTATAAATCGATGAACACCGGTTGCACGCACGAAAAA 122672
Query 7334 GTGTCCCGTTCCATCTGAGCC 7354
||||| ||||||| |||||||
Sbjct 122673 GTGTCACGTTCCACCTGAGCC 122693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 51408511338834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |