Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq604 159 7e-35 seq1936 111 3e-20 seq510 82.4 2e-11 seq4391 80.6 5e-11 >seq604 Length=20538 Score = 159 bits (176), Expect = 7e-35 Identities = 128/154 (83%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 22899 AAAAATAAAATTTTCAAACAAA-GGTTCATTTGGAATAACTTTTTAATGACTTTACCGAT 22957 ||||| ||||||||| || |||| ||||||||||||||| || | || ||||||| Sbjct 10961 AAAAAAAAAATTTTCTTGAAAGTGGTTTTTTTGGAATAACTTTTAAACGGCTCTACCGAT 10902 Query 22958 CGATTCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCACCGGCCCG 23017 ||||||||||||||||||||| ||||| || ||||||||||||||||| |||| | | Sbjct 10901 CGATTCCAAAAACTAATCAGCTCTTAATATCAAAAAACCACGTCGATTGMCACCAAGCTG 10842 Query 23018 GCCAGAATCGGTTGATTCGTTCCGGAGATATCGT 23051 | || ||||||||||||||||| |||||||||| Sbjct 10841 GTCAAAATCGGTTGATTCGTTCGAGAGATATCGT 10808 Score = 89.7 bits (98), Expect = 1e-13 Identities = 91/119 (76%), Gaps = 9/119 (8%) Strand=Plus/Minus Query 23705 TCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCTATC 23764 |||||||||||||| |||||||||||| |||| |||| || |||||||||||||| Sbjct 10666 TCAAAAGTTATTGCGGTTTGAAAATTCCAAAAA----TAGTRTTCTATGAAACTTCTATC 10611 Query 23765 AGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGCTC 23823 ||||||| |||| | | | |||||||| || ||||| ||| | ||||| ||| Sbjct 10610 AGACTTTCGAGC-----TGAGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAACTC 10557 >seq1936 Length=6208 Score = 111 bits (122), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 22876 ATATTTTGATAAAAGCT-----AATCTAAAAAATAAAATTTT--CAAACAAAGGTTCATT 22928 ||||||||| |||| || || |||| ||| |||||||| |||| |||| | Sbjct 2773 ATATTTTGAAAAAA-CTCAAAAAAACTAAGAAAAAAAATTTTTTCAAATGT-GGTTTTTG 2830 Query 22929 TGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACCTC 22988 |||||||||||| || | ||| ||||||| ||||||||||||||||||| || || || Sbjct 2831 CGGAATAACTTTTGAACGGCTTGACCGATCAATTCCAAAAACTAATCAGCTCTCAAGCTT 2890 Query 22989 GAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGATAT 23048 ||||||| |||||||| | | | | |||||||||||| |||| ||||||| Sbjct 2891 GAAAAACAACGTCGATCRCGCTCAAGCGATTGAAAATCGGTTGATTTGTTCGTGAGATAT 2950 Query 23049 CGT 23051 ||| Sbjct 2951 CGT 2953 >seq510 Length=27489 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/134 (75%), Gaps = 8/134 (6%) Strand=Plus/Plus Query 17895 CGGTGGAAAACGATGGAATCTATTTTGATTTTCC-----TTCTAAGCGCCAGTCGATAAA 17949 ||||||||||||| | |||||||||||||||| | | || ||||| ||||||||| Sbjct 5690 CGGTGGAAAACGACGAAATCTATTTTGATTTTTCAATATTATTAGGCGCCGGTCGATAAA 5749 Query 17950 CACCCATTTA-GGGTTCGCATCGCAGCCGTCATAAAGTGTACAAAACAGGTACGCGTTGA 18008 || ||||||| ||||| ||| |||| | | |||| | || | || | ||||||| Sbjct 5750 CAGCCATTTAGGGGTTTACATTGCAG-TATGAGAAAGCGCTAGAATCGGGCATGCGTTGA 5808 Query 18009 ATAAAATTACTTTT 18022 |||||| | ||||| Sbjct 5809 ATAAAAGT-CTTTT 5821 >seq4391 Length=416181 Score = 80.6 bits (88), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 8/135 (6%) Strand=Plus/Plus Query 17895 CGGTGGAAAACGATGGAATCTATTTTGATTT-----TCCTTCTAAGCGCCAGTCGATAAA 17949 ||||||||||||| | ||||||||||||||| | | |||||||| ||||||||| Sbjct 367423 CGGTGGAAAACGACGAAATCTATTTTGATTTTTTAATATTATTAAGCGCCGGTCGATAAA 367482 Query 17950 CACCCATTTA-GGGTTCGCATCGCAGCCGTCATAAAGTGTACAAAACAGGTACGCGTTGA 18008 || ||| ||| ||||| | | |||| | | | |||| | || | || | ||||||| Sbjct 367483 CAGCCACTTAGGGGTTTACTTTGCAGACATGAGAAAGCGCTAGAATCGGGCATGCGTTGA 367542 Query 18009 ATAAAATTACTTTTT 18023 ||||| || ||||| Sbjct 367543 ATAAA--TAATTTTT 367555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102183311375684