Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq604 197 8e-47 seq1936 168 4e-38 seq866 131 9e-27 >seq604 Length=20538 Score = 197 bits (218), Expect = 8e-47 Identities = 143/169 (85%), Gaps = 21/169 (12%) Strand=Plus/Plus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401 |||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct 10420 AAAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTGCAACTTCCCGCTAATTC 10479 Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATA 8461 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 10480 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTG--------AGCTCAAAATATA 10531 Query 8462 ATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 ||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 10532 ATTTATGTGATATTTTGAGCTCGCTGAGTTCAAAGAAATAATATTTCTA 10580 >seq1936 Length=6208 Score = 168 bits (186), Expect = 4e-38 Identities = 128/149 (86%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 1047 GTGACAACATCGCGGGGGTAGTCAGGGAAGCTTCCTATGACCTTAAAACGTCGAGATCTG 1106 |||| ||| || | | | ||||||||||| |||||| | ||| ||| |||||||||| Sbjct 2730 GTGATAACCTCTCAGAAGGAGTCAGGGAAGATTCCTAGGGCCTCAAATA-TCGAGATCTG 2672 Query 1107 ATGAAAACTCGATTTTTGCAAAACGGGGTGAAAACAATAACTTCCCGATTTTT-GAAAAT 1165 |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| Sbjct 2671 TTGAAAACTCGATTTTTGCAAAACGGGGTAAAACCAATAACTTCCCGATTTTTCRAAAAT 2612 Query 1166 CTTCAATTTTCTTAGCGGGAAGTTAAAAA 1194 ||| |||||||||||||||||||||||| Sbjct 2611 CTTGGATTTTCTTAGCGGGAAGTTAAAAA 2583 >seq866 Length=16490 Score = 131 bits (144), Expect = 9e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1075 AGCTTCCTATGACCTTAAAACGTCGAGATCTGATGAAAACTCGATTTTTGCAAAACGGGG 1134 |||||| | ||||| | ||||| || ||||||||||||||||||||| | ||| ||||| Sbjct 7865 AGCTTCGCAAGACCTCAGAACGTTGATATCTGATGAAAACTCGATTTTCGAAAATCGGGG 7806 Query 1135 TGAAAACAATAACTTCCCGATTTTTGAAAATCTTCAATTTTCTTAGCGGGAAGTTAAAAA 1194 | | | ||||| | || | |||||||||| |||||||||||||||||||||||||||| Sbjct 7805 TAATACCAATACTTWTCCAACTTTTGAAAATTTTCAATTTTCTTAGCGGGAAGTTAAAAA 7746 Query 1195 T 1195 | Sbjct 7745 T 7745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27995375417828