Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006647.1
Length=8785
Score E
Sequences producing significant alignments: (Bits) Value
seq604 197 8e-47
seq1936 168 4e-38
seq866 131 9e-27
>seq604
Length=20538
Score = 197 bits (218), Expect = 8e-47
Identities = 143/169 (85%), Gaps = 21/169 (12%)
Strand=Plus/Plus
Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401
|||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 10420 AAAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTGCAACTTCCCGCTAATTC 10479
Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATA 8461
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 10480 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTG--------AGCTCAAAATATA 10531
Query 8462 ATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510
||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 10532 ATTTATGTGATATTTTGAGCTCGCTGAGTTCAAAGAAATAATATTTCTA 10580
>seq1936
Length=6208
Score = 168 bits (186), Expect = 4e-38
Identities = 128/149 (86%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 1047 GTGACAACATCGCGGGGGTAGTCAGGGAAGCTTCCTATGACCTTAAAACGTCGAGATCTG 1106
|||| ||| || | | | ||||||||||| |||||| | ||| ||| ||||||||||
Sbjct 2730 GTGATAACCTCTCAGAAGGAGTCAGGGAAGATTCCTAGGGCCTCAAATA-TCGAGATCTG 2672
Query 1107 ATGAAAACTCGATTTTTGCAAAACGGGGTGAAAACAATAACTTCCCGATTTTT-GAAAAT 1165
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 2671 TTGAAAACTCGATTTTTGCAAAACGGGGTAAAACCAATAACTTCCCGATTTTTCRAAAAT 2612
Query 1166 CTTCAATTTTCTTAGCGGGAAGTTAAAAA 1194
||| ||||||||||||||||||||||||
Sbjct 2611 CTTGGATTTTCTTAGCGGGAAGTTAAAAA 2583
>seq866
Length=16490
Score = 131 bits (144), Expect = 9e-27
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 1075 AGCTTCCTATGACCTTAAAACGTCGAGATCTGATGAAAACTCGATTTTTGCAAAACGGGG 1134
|||||| | ||||| | ||||| || ||||||||||||||||||||| | ||| |||||
Sbjct 7865 AGCTTCGCAAGACCTCAGAACGTTGATATCTGATGAAAACTCGATTTTCGAAAATCGGGG 7806
Query 1135 TGAAAACAATAACTTCCCGATTTTTGAAAATCTTCAATTTTCTTAGCGGGAAGTTAAAAA 1194
| | | ||||| | || | |||||||||| ||||||||||||||||||||||||||||
Sbjct 7805 TAATACCAATACTTWTCCAACTTTTGAAAATTTTCAATTTTCTTAGCGGGAAGTTAAAAA 7746
Query 1195 T 1195
|
Sbjct 7745 T 7745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 27995375417828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |