Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006655.1
Length=15279
Score E
Sequences producing significant alignments: (Bits) Value
seq298 96.9 3e-16
seq310 91.5 1e-14
seq1077 78.8 9e-11
>seq298
Length=39205
Score = 96.9 bits (106), Expect = 3e-16
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 11129 CCCGGGAAAAACGGATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGACGAG 11184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 32761 CCCGGGAAAAACGAATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGACGAG 32816
>seq310
Length=30855
Score = 91.5 bits (100), Expect = 1e-14
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 11125 ATATCCCGGGAAAAACGGATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGACGAG 11184
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 27061 ATGTCTCGGGAAAAACGAATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGATGAG 27002
Score = 78.8 bits (86), Expect = 9e-11
Identities = 63/76 (83%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11786 CAAATATAGTTATATCTGGCCAGATATAATAAAATCTTTTTATGTCTGAtttttttttCA 11845
|| ||||||||||||||||||| |||||| | |||| | ||||||| || ||||||
Sbjct 23314 CAGATATAGTTATATCTGGCCAAATATAACTAGATCTCATCATGTCTGGTTAAGTTTTCA 23255
Query 11846 ACCCAGATATAGTTAT 11861
|||||||||||||||
Sbjct 23254 GCCCAGATATAGTTAT 23239
>seq1077
Length=11932
Score = 78.8 bits (86), Expect = 9e-11
Identities = 63/76 (83%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11786 CAAATATAGTTATATCTGGCCAGATATAATAAAATCTTTTTATGTCTGAtttttttttCA 11845
|| ||||||||||||||||||| |||||| | |||| | ||||||| || ||||||
Sbjct 10917 CAGATATAGTTATATCTGGCCAAATATAACTAGATCTGATCATGTCTGGTTAAGTTTTCA 10858
Query 11846 ACCCAGATATAGTTAT 11861
|||||||||||||||
Sbjct 10857 GCCCAGATATAGTTAT 10842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 48771849236058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |