Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006655.1 Length=15279 Score E Sequences producing significant alignments: (Bits) Value seq298 96.9 3e-16 seq310 91.5 1e-14 seq1077 78.8 9e-11 >seq298 Length=39205 Score = 96.9 bits (106), Expect = 3e-16 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 11129 CCCGGGAAAAACGGATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGACGAG 11184 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 32761 CCCGGGAAAAACGAATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGACGAG 32816 >seq310 Length=30855 Score = 91.5 bits (100), Expect = 1e-14 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11125 ATATCCCGGGAAAAACGGATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGACGAG 11184 || || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 27061 ATGTCTCGGGAAAAACGAATTAGATCTGGCCAGATCTTTAAATTGTCTCTATCTGATGAG 27002 Score = 78.8 bits (86), Expect = 9e-11 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11786 CAAATATAGTTATATCTGGCCAGATATAATAAAATCTTTTTATGTCTGAtttttttttCA 11845 || ||||||||||||||||||| |||||| | |||| | ||||||| || |||||| Sbjct 23314 CAGATATAGTTATATCTGGCCAAATATAACTAGATCTCATCATGTCTGGTTAAGTTTTCA 23255 Query 11846 ACCCAGATATAGTTAT 11861 ||||||||||||||| Sbjct 23254 GCCCAGATATAGTTAT 23239 >seq1077 Length=11932 Score = 78.8 bits (86), Expect = 9e-11 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11786 CAAATATAGTTATATCTGGCCAGATATAATAAAATCTTTTTATGTCTGAtttttttttCA 11845 || ||||||||||||||||||| |||||| | |||| | ||||||| || |||||| Sbjct 10917 CAGATATAGTTATATCTGGCCAAATATAACTAGATCTGATCATGTCTGGTTAAGTTTTCA 10858 Query 11846 ACCCAGATATAGTTAT 11861 ||||||||||||||| Sbjct 10857 GCCCAGATATAGTTAT 10842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48771849236058