Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006656.1
Length=12682
Score E
Sequences producing significant alignments: (Bits) Value
seq4500 237 1e-58
seq4210 215 4e-52
seq593 212 5e-51
seq30 192 5e-45
seq2 190 2e-44
seq882 78.8 8e-11
>seq4500
Length=50712
Score = 237 bits (262), Expect = 1e-58
Identities = 163/183 (89%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 8107 GAAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTC 8166
||||| || |||||||||| |||||| ||||| ||||| ||||||| ||||| |||||||
Sbjct 49451 GAAGCCAATCAGCTGATATAATGGAGGAAGTGGGCGTCCATTTTTT-CGAGGCAGGTGTC 49393
Query 8167 TTTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACAC 8226
|| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 49392 TTCAGACCACTATAACTTTAATTCTACTGAATATTTTTAGCTAAAAATTTAACTGTATAC 49333
Query 8227 TCTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTCTA 8286
|||||||||||||||||| ||||| || |||||||||||||| || |||| ||||||||
Sbjct 49332 TCTTGAAATATGTATAAATAAATGATAAAAAGTTCAAAGTTCTATCTCTTCATTGGTCTT 49273
Query 8287 TAC 8289
|||
Sbjct 49272 TAC 49270
>seq4210
Length=91500
Score = 215 bits (238), Expect = 4e-52
Identities = 155/176 (88%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 8109 AGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCTT 8168
||| || |||||||||||| |||| ||||| ||||| |||||| ||||| ||||||||
Sbjct 41858 AGCCAATCAGCTGATATCACGGAGGAAGTGGGCGTCCATTTTTC-CGAGGCGGGTGTCTT 41916
Query 8169 TAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACTC 8228
||||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||| ||||
Sbjct 41917 CAGACCACTATAACTTTAATTCTACTAAATATTTTT-GCTAAAAATTTAACTGTATACTC 41975
Query 8229 TTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTC 8284
|||||||||||||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct 41976 TTGAAATATGTATAAATAAATGGTAAAAAGTTCAAAGTTCTATCTCTTTATTGGTC 42031
>seq593
Length=23396
Score = 212 bits (234), Expect = 5e-51
Identities = 157/182 (86%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167
|||| || ||||||||||| ||||| ||||| | ||| |||||| ||||| | ||||
Sbjct 18609 AAGCCAATCAGCTGATATCGTGGAGGAAGTGGGTGTCCGTTTTTT-CGAGGCGGCTGTCC 18667
Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACT 8227
| |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 18668 TCAGACCACTATAACTGTAATTCTACTGAATATTTTTAGCTAAAAATTTAACTGTATACT 18727
Query 8228 CTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTCTAT 8287
||||||||||||||||| |||||||| |||||||||||||| || |||| |||||||| |
Sbjct 18728 CTTGAAATATGTATAAATAAATGGTAAAAAGTTCAAAGTTCTATCTCTTCATTGGTCTTT 18787
Query 8288 AC 8289
||
Sbjct 18788 AC 18789
>seq30
Length=48595
Score = 192 bits (212), Expect = 5e-45
Identities = 136/156 (87%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 8134 AAGTGAGCGTCAAtttttttCGAGGTAGGTGTCTTTAGACCACTATAACTTCAATTCTAC 8193
||||| | ||| ||||||| ||||| | |||||| ||||||||||||||| ||||||||
Sbjct 42182 AAGTGGGYGTCCATTTTTT-CGAGGCGGTTGTCTTCAGACCACTATAACTTTAATTCTAC 42240
Query 8194 TGAATGTTTTTAGCTCAAAATTTAACTGTACACTCTTGAAATATGTATaaaaaaaTGGTA 8253
||||| ||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 42241 TGAATATTTTTAGCTAAAAATTTAACYGTACATTCTTGAAATATGTATAAATAAATGGTA 42300
Query 8254 GAAAGTTCAAAGTTCCATGTCTTTATTGGTCTATAC 8289
|||||||||||||| || ||| |||||||| |||
Sbjct 42301 AAAAGTTCAAAGTTCTATCCCTTCATTGGTCTTTAC 42336
>seq2
Length=705801
Score = 190 bits (210), Expect = 2e-44
Identities = 152/182 (84%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167
|||| || || ||||||||| |||| ||||| ||||| |||| || ||| ||| | |
Sbjct 425147 AAGCCAATCAACTGATATCACGGAGGAAGTGGGCGTCC-TTTTCGTCAAGGCGGGTATTT 425205
Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACT 8227
| |||||||||| |||| ||||||||||||| || ||| || |||||||||||||| |||
Sbjct 425206 TCAGACCACTATCACTTTAATTCTACTGAATATTCTTATCTAAAAATTTAACTGTATACT 425265
Query 8228 CTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTCTAT 8287
|||||||||||||| || |||||||| |||||||||||||| || |||| |||||||| |
Sbjct 425266 CTTGAAATATGTATGAATAAATGGTAAAAAGTTCAAAGTTCTATCTCTTCATTGGTCTTT 425325
Query 8288 AC 8289
||
Sbjct 425326 AC 425327
>seq882
Length=14703
Score = 78.8 bits (86), Expect = 8e-11
Identities = 88/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167
|||| || ||||||| ||| ||||||||||| | ||| | |||||||||| || | |
Sbjct 6040 AAGCCAATCAGCTGAAATCGTGGAGAAAGTGCGAGTCCA-TTTTTTCGAGACGGGGCTGT 5982
Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTA-ACTG 8221
| ||||| || ||||| |||||| || ||||||||||||| |||| ||||
Sbjct 5981 TCAGACCCCTGTAACTCATGTTCTACATTATATTTTTAGCTCAAATTTTATACTG 5927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40465140877112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |