Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006656.1 Length=12682 Score E Sequences producing significant alignments: (Bits) Value seq4500 237 1e-58 seq4210 215 4e-52 seq593 212 5e-51 seq30 192 5e-45 seq2 190 2e-44 seq882 78.8 8e-11 >seq4500 Length=50712 Score = 237 bits (262), Expect = 1e-58 Identities = 163/183 (89%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 8107 GAAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTC 8166 ||||| || |||||||||| |||||| ||||| ||||| ||||||| ||||| ||||||| Sbjct 49451 GAAGCCAATCAGCTGATATAATGGAGGAAGTGGGCGTCCATTTTTT-CGAGGCAGGTGTC 49393 Query 8167 TTTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACAC 8226 || ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || Sbjct 49392 TTCAGACCACTATAACTTTAATTCTACTGAATATTTTTAGCTAAAAATTTAACTGTATAC 49333 Query 8227 TCTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTCTA 8286 |||||||||||||||||| ||||| || |||||||||||||| || |||| |||||||| Sbjct 49332 TCTTGAAATATGTATAAATAAATGATAAAAAGTTCAAAGTTCTATCTCTTCATTGGTCTT 49273 Query 8287 TAC 8289 ||| Sbjct 49272 TAC 49270 >seq4210 Length=91500 Score = 215 bits (238), Expect = 4e-52 Identities = 155/176 (88%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 8109 AGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCTT 8168 ||| || |||||||||||| |||| ||||| ||||| |||||| ||||| |||||||| Sbjct 41858 AGCCAATCAGCTGATATCACGGAGGAAGTGGGCGTCCATTTTTC-CGAGGCGGGTGTCTT 41916 Query 8169 TAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACTC 8228 ||||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||| |||| Sbjct 41917 CAGACCACTATAACTTTAATTCTACTAAATATTTTT-GCTAAAAATTTAACTGTATACTC 41975 Query 8229 TTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTC 8284 |||||||||||||||| |||||||| |||||||||||||| || |||||||||||| Sbjct 41976 TTGAAATATGTATAAATAAATGGTAAAAAGTTCAAAGTTCTATCTCTTTATTGGTC 42031 >seq593 Length=23396 Score = 212 bits (234), Expect = 5e-51 Identities = 157/182 (86%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167 |||| || ||||||||||| ||||| ||||| | ||| |||||| ||||| | |||| Sbjct 18609 AAGCCAATCAGCTGATATCGTGGAGGAAGTGGGTGTCCGTTTTTT-CGAGGCGGCTGTCC 18667 Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACT 8227 | |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||| Sbjct 18668 TCAGACCACTATAACTGTAATTCTACTGAATATTTTTAGCTAAAAATTTAACTGTATACT 18727 Query 8228 CTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTCTAT 8287 ||||||||||||||||| |||||||| |||||||||||||| || |||| |||||||| | Sbjct 18728 CTTGAAATATGTATAAATAAATGGTAAAAAGTTCAAAGTTCTATCTCTTCATTGGTCTTT 18787 Query 8288 AC 8289 || Sbjct 18788 AC 18789 >seq30 Length=48595 Score = 192 bits (212), Expect = 5e-45 Identities = 136/156 (87%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 8134 AAGTGAGCGTCAAtttttttCGAGGTAGGTGTCTTTAGACCACTATAACTTCAATTCTAC 8193 ||||| | ||| ||||||| ||||| | |||||| ||||||||||||||| |||||||| Sbjct 42182 AAGTGGGYGTCCATTTTTT-CGAGGCGGTTGTCTTCAGACCACTATAACTTTAATTCTAC 42240 Query 8194 TGAATGTTTTTAGCTCAAAATTTAACTGTACACTCTTGAAATATGTATaaaaaaaTGGTA 8253 ||||| ||||||||| |||||||||| ||||| |||||||||||||||||| |||||||| Sbjct 42241 TGAATATTTTTAGCTAAAAATTTAACYGTACATTCTTGAAATATGTATAAATAAATGGTA 42300 Query 8254 GAAAGTTCAAAGTTCCATGTCTTTATTGGTCTATAC 8289 |||||||||||||| || ||| |||||||| ||| Sbjct 42301 AAAAGTTCAAAGTTCTATCCCTTCATTGGTCTTTAC 42336 >seq2 Length=705801 Score = 190 bits (210), Expect = 2e-44 Identities = 152/182 (84%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167 |||| || || ||||||||| |||| ||||| ||||| |||| || ||| ||| | | Sbjct 425147 AAGCCAATCAACTGATATCACGGAGGAAGTGGGCGTCC-TTTTCGTCAAGGCGGGTATTT 425205 Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACT 8227 | |||||||||| |||| ||||||||||||| || ||| || |||||||||||||| ||| Sbjct 425206 TCAGACCACTATCACTTTAATTCTACTGAATATTCTTATCTAAAAATTTAACTGTATACT 425265 Query 8228 CTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTCTAT 8287 |||||||||||||| || |||||||| |||||||||||||| || |||| |||||||| | Sbjct 425266 CTTGAAATATGTATGAATAAATGGTAAAAAGTTCAAAGTTCTATCTCTTCATTGGTCTTT 425325 Query 8288 AC 8289 || Sbjct 425326 AC 425327 >seq882 Length=14703 Score = 78.8 bits (86), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167 |||| || ||||||| ||| ||||||||||| | ||| | |||||||||| || | | Sbjct 6040 AAGCCAATCAGCTGAAATCGTGGAGAAAGTGCGAGTCCA-TTTTTTCGAGACGGGGCTGT 5982 Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTA-ACTG 8221 | ||||| || ||||| |||||| || ||||||||||||| |||| |||| Sbjct 5981 TCAGACCCCTGTAACTCATGTTCTACATTATATTTTTAGCTCAAATTTTATACTG 5927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40465140877112