Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq604 352 8e-93 seq1936 228 2e-55 seq866 114 3e-21 seq403 93.3 1e-14 seq857 84.2 6e-12 >seq604 Length=20538 Score = 352 bits (390), Expect = 8e-93 Identities = 283/344 (82%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| || | Sbjct 10929 GGAATAACTTTTAAACGGCTCTACCGATCGATTCCAAAAACTAATCAGCTCTTAATATCA 10870 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||||| || | |||||| ||||||||||||||||| ||| |||| Sbjct 10869 AAAAACCACGTCGATTGMCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAGATATC 10810 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||||||||||||||||||||||||| ||||||||| |||| ||||| Sbjct 10809 GTGAACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGGATTACTCCGRAATTTTCGGTTCG 10750 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 ||||| ||| | || || |||||||| | | |||| ||||| ||||| ||||| Sbjct 10749 ATCAATGAAAACCTGAAAATCACTTATGAGGATGATAAAACTGCGTCGAATGGTGCCAAC 10690 Query 40370 CGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGT 40429 ||||| ||||| | | || ||||||||||||| |||||||||||||| ||||||||| Sbjct 10689 CGCGTGAAAATTGGTTSATCSATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGT 10630 Query 40430 GTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 || ||| |||||||||||||||||| ||||| |||||| || Sbjct 10629 RTTCTATGAAACTTCTATCAGACTTTCGAGCTGAGAGAGCTCAA 10586 >seq1936 Length=6208 Score = 228 bits (252), Expect = 2e-55 Identities = 255/338 (75%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||| |||||||| |||||| |||||||||||||||| |||||| || || Sbjct 2832 GGAATAACTTTTGAACGGCTTGACCGATCAATTCCAAAAACTAATCAGCTCTCAAGCTTG 2891 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | |||| |||||||| | ||| | | || ||||||||||| ||||||||| |||| Sbjct 2892 AAAAACAACGTCGATCRCGCTCAAGCGATTGAAAATCGGTTGATTTGTTCGTGAGATATC 2951 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||| |||| ||||||||||||||||| | ||| ||||||||||| | | Sbjct 2952 GTGAACGAAA-AAAATCGAAAAAAGTGTTTTTTTGCAATAACTCCGAAATTTTTCATATG 3010 Query 40310 ATCAA--ATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCA 40367 ||| | | | ||||| | |||||| | || |||||| | | | || || ||| Sbjct 3011 ATCGATTAGTRGTCTTAA--TTCTTTTATAATACTCAAAAAACTACATCGATCATCGCCA 3068 Query 40368 ACCGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATA 40427 ||| || ||||||| | | | ||||||||||||| || | | ||||| ||||||||| Sbjct 3069 ACCAGGTGAAAATCGGTTAACTCATTCAAAAGTTATGGCAGCTGGAAAA-TTAAAAAATT 3127 Query 40428 GTGTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAA 40465 || || ||| ||| ||| || | | |||||||||| || Sbjct 3128 GTRTTTTATTAAATTTCCATTAAATTTTTGAGCTCAAA 3165 Score = 170 bits (188), Expect = 5e-38 Identities = 144/175 (82%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 17715 acacacacacaAACATAGTGATAATATCGCGGCAGTAGTCACGGAAGCTTCCTATGATCT 17774 ||||||| ||| ||| |||||||| || | | || ||||| ||||| |||||| | || Sbjct 2747 ACACACATACAGACACAGTGATAACCTCTCAGAAGGAGTCAGGGAAGATTCCTAGGGCCT 2688 Query 17775 TAAAACGTCGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGGTAAAACCAATAACTT 17834 ||| |||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 2687 CAAATA-TCGAGATCTGTTGAAAACTCGATTTTTGCAAAACGGGGTAAAACCAATAACTT 2629 Query 17835 CCCGA-TTTTCGAAAATCTTCAAtttttttAGCGGGAAGGTAAAAATAGCAATTA 17888 ||||| ||||| |||||||| ||||| ||||||||||| |||||| | ||||| Sbjct 2628 CCCGATTTTTCRAAAATCTTGGATTTTCTTAGCGGGAAGTTAAAAAAACTAATTA 2574 Score = 156 bits (172), Expect = 1e-33 Identities = 185/247 (75%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 40221 AACATCGGTTGATTCGTTCGTGAGTTATCGTTGACGAAAGAAAACCGAAAAAAGTGTTTT 40280 || ||||||||||| ||||||||| |||||| |||||| |||| ||||||||||||||| Sbjct 4278 AAAATCGGTTGATTTGTTCGTGAGATATCGTGAACGAAA-AAAATCGAAAAAAGTGTTTT 4336 Query 40281 TTCGGAATTACTCCGAAATTCGTGGTTCAATCAAATTGAA--CTTAAAGATTTTTTATGA 40338 || | ||| ||||||||||| | | ||| | | | | ||||| | |||||| | Sbjct 4337 TTTGCAATAACTCCGAAATTTTTCATATGATCGATTAGTAGTCTTAAT--TCTTTTATAA 4394 Query 40339 GGCTTAAAAAATTGCGTTGAATGTCACCAACCGCGTAAAAATCGTTCCATTTATTCAAAA 40398 || |||||| | | | || || |||||| || ||||||| | | | |||||||| Sbjct 4395 TACTCAAAAAACTACATCGATCATCGCCAACCAGGTGAAAATCGGTTAACTCATTCAAAA 4454 Query 40399 GTTATCGCGGTTTGAAAATTTAAAAAATAGTGTTGTATCAAACTTCTATCAGACTTTTGA 40458 ||||| || | | ||||| ||||||||| || || ||| ||| ||| || | | |||||| Sbjct 4455 GTTATGGCAGCTGGAAAA-TTAAAAAATTGTRTTTTATTAAATTTCCATTAAATTTTTGA 4513 Query 40459 GCTCGAA 40465 |||| || Sbjct 4514 GCTCAAA 4520 Score = 138 bits (152), Expect = 3e-28 Identities = 116/140 (83%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 39716 TTTAATTA---TTTTTAACTTCCCGCTAAGAAAATCGGAGATCTTC-AAAAATCGGGAAG 39771 |||||||| ||||||||||||||||||||||||| |||| || ||||||||||||| Sbjct 2572 TTTAATTAGTTTTTTTAACTTCCCGCTAAGAAAATCCAAGATTTTYGAAAAATCGGGAAG 2631 Query 39772 TTATTGGTTTTACCCCCTTTTGTAAAAATTGATTTTTCACTAGATCTCGACGTTTCAAGG 39831 |||||||||||||||| ||||| |||||| || |||||| ||||||||| ||| ||| Sbjct 2632 TTATTGGTTTTACCCCGTTTTGCAAAAATCGAGTTTTCAACAGATCTCGATATTT-GAGG 2690 Query 39832 TCTCAGGAAGCTTCTTTGAC 39851 | ||||| |||| |||| Sbjct 2691 CCCTAGGAATCTTCCCTGAC 2710 >seq866 Length=16490 Score = 114 bits (126), Expect = 3e-21 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 17760 AGCTTCCTATGATCTTAAAACGTCGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGG 17819 |||||| | || || | ||||| || |||||||| |||||||||||| | || ||||| Sbjct 7865 AGCTTCGCAAGACCTCAGAACGTTGATATCTGATGAAAACTCGATTTTCGAAAATCGGGG 7806 Query 17820 TAAAACCAATAACTTCCCGATTTTCGAAAATCTTCAAtttttttAGCGGGAAGGTAAAAA 17879 ||| ||||||| | || | ||| |||||| ||||||||| ||||||||||| |||||| Sbjct 7805 TAATACCAATACTTWTCCAACTTTTGAAAATTTTCAATTTTCTTAGCGGGAAGTTAAAAA 7746 Query 17880 TA 17881 || Sbjct 7745 TA 7744 Score = 109 bits (120), Expect = 1e-19 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 39717 TTAATTATTTTTAACTTCCCGCTAAGAAAATCGGAGATCTTCAAAAATCGGGAAGTTATT 39776 ||||||||||||||||||||||||||||||| | | || ||||||| | || | |||| Sbjct 7739 TTAATTATTTTTAACTTCCCGCTAAGAAAATTGAAAATTTTCAAAAGTTGGAWAAGTATT 7798 Query 39777 GGTTTTACCCCCTTTTGTAAAAATTGATTTTTCACTAGATCTCGACGTTTCAAGGTCTCA 39836 ||| ||||||| ||| ||||| || |||||| |||| || ||||| |||||| Sbjct 7799 GGTATTACCCCGATTTTCGAAAATCGAGTTTTCATCAGATATCAACGTTCTGAGGTCTTG 7858 Query 39837 GGAAGCTTCTTTGACCA 39853 |||||| || ||||| Sbjct 7859 CGAAGCTGTTTCGACCA 7875 >seq403 Length=39204 Score = 93.3 bits (102), Expect = 1e-14 Identities = 102/128 (80%), Gaps = 11/128 (9%) Strand=Plus/Plus Query 41012 TATACTCTGTACACaatttacttagttaatttaatattatgtattaatttt-tataaatg 41070 |||||| ||||||| ||| ||| |||| |||| ||||| || | | ||| ||| Sbjct 20383 TATACTTTGTACAC----TACATAGCTAAT--AATACC-TGTATAAACTGTATATGTATG 20435 Query 41071 tattatattt-ttCTGGTGTCTATGCACAGGTGTTTCTTGCACCTCTATAGAATGTTATA 41129 ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 20436 TATTATACCAATTCTGGTGTCTATGCACAGGTG-CTCTTGCACCTCTATAGAAT-ATATA 20493 Query 41130 CCAGAAGT 41137 |||||||| Sbjct 20494 CCAGAAGT 20501 >seq857 Length=317079 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/128 (78%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 41012 TATACTCTGTACACaatttacttagttaatttaatattatgtattaatttt-tataaatg 41070 |||||| ||||||| ||| ||| |||| |||| ||||| || | | ||| | | Sbjct 259760 TATACTTTGTACAC----TACATAGCTAAT--AATACC-TGTATAAACTGTATATGTACG 259708 Query 41071 tattatattt-ttCTGGTGTCTATGCACAGGTGTTTCTTGCACCTCTATAGAATGTTATA 41129 ||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||| Sbjct 259707 TATTATACCAATTCTGGTGTCTATGGACAGGTG-CTCTTGCACCTCTATAGAAT-ATATA 259650 Query 41130 CCAGAAGT 41137 |||||||| Sbjct 259649 CCAGAAGT 259642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132904861213410