Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq1569 217 2e-52 seq3939 183 3e-42 seq45 159 4e-35 seq1120 152 6e-33 seq614 129 7e-26 >seq1569 Length=285530 Score = 217 bits (240), Expect = 2e-52 Identities = 209/262 (80%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATA-TG 4810 |||||||||||||||||| ||||| |||||| ||| ||||||||||||||| || | Sbjct 240849 AATAGTATATTACACTACTAGGGCCGAAAGTATGAATTTCCTGCACTGCGCGGAGTAGGG 240908 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCA-AATTTCTGCCCA 4869 ||||||| |||||||||||| |||||| |||||||||||||| ||| | | || |||| Sbjct 240909 CCCGAGGTGAAGCCGAGGGCTCCATGGCGCGCAGTTCAGGGCTTTCATACTATCGGCCCG 240968 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTA---AAAATTGCGTTG 4926 ||| |||||||||| ||||||| || |||||||||||||| || ||| ||| | Sbjct 240969 TGTGGTGTATACTATTTTTCTTCATAGCCGGTCGAAAGTACGATAGATAAATATGC-ATA 241027 Query 4927 aaaaaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCg 4986 || ||||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct 241028 TCCTTTTTTAATGCCTG--TCCGACATTTGCTGCACGAGCAAAGCGAGTACTGCTGGTC- 241084 Query 4987 gggggggCAGGCATCAAATACA 5008 |||||||||||| ||||||| Sbjct 241085 --GGGGGCAGGCATTAAATACA 241104 >seq3939 Length=161276 Score = 183 bits (202), Expect = 3e-42 Identities = 201/260 (77%), Gaps = 13/260 (5%) Strand=Plus/Plus Query 4754 TAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATA-TGCC 4812 ||||||||||||| || ||||| |||| | ||| ||||||||||||||| || ||| Sbjct 87277 TAGTATATTACACCACTAGGGCCGAAACTATGAATTTCCTGCACTGCGCGGAGTAGGGCC 87336 Query 4813 CGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTC-AAATTTCTGCCCATG 4871 |||||||| ||||||||| || ||| |||| ||||||||| || | | || |||| || Sbjct 87337 CGAGGCGAGGCCGAGGGCTCCACGGCGCGCAATTCAGGGCTTTCGTACTATCGGCCCGTG 87396 Query 4872 TAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTA---AAAATTGCGTTGaa 4928 | |||||||||| ||||||| || |||| |||||||| || ||| ||| | Sbjct 87397 TGGTGTATACTATTTTTCTTCATAGCCGGTGAAAAGTACGATAGATAAATATGC-ATATC 87455 Query 4929 aaaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggg 4988 || ||||||| |||||||||| | ||||||| |||||||||||||||||| Sbjct 87456 CTTTTTTAATGCCTG--CCCGACATTT--GACACGAGCAAAGCGAGTGCTGCTGGTC--- 87508 Query 4989 gggggCAGGCATCAAATACA 5008 |||||||||||||||||||| Sbjct 87509 GGGGGCAGGCATCAAATACA 87528 >seq45 Length=56562 Score = 159 bits (176), Expect = 4e-35 Identities = 195/261 (75%), Gaps = 25/261 (10%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATATGC 4811 |||||||||||| ||||| ||||| |||||| ||| ||||||||||||||| | | Sbjct 4020 AATAGTATATTAAACTACTAGGGCCGAAAGTATGAATTTCCTGCACTGCGCG-----TTC 4074 Query 4812 CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATT-TCTGCCCAT 4870 ||| |||| || ||| |||||||||||||| ||| | | || |||| | Sbjct 4075 ----------GCCTCGGGCTCCACGGCGCGCAGTTCAGGGCTTTCATACTATCGGCCCGT 4124 Query 4871 GTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAA--AAT-TGCGTTGa 4927 | |||||||||| ||| ||| || |||||||||||||| || | ||| ||| | Sbjct 4125 ATGGTGTATACTATTTTCCTTCATAGCCGGTCGAAAGTACGATAGATAAATATGCATATC 4184 Query 4928 aaaaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCgg 4987 || |||||||||| ||||||||| |||||||| ||||||||||||||| || Sbjct 4185 CTTTT-TTAATGCCTGCCC--GACATTTGCTGCACGAGCAAAGCGAGTGCTGCTGCTC-- 4239 Query 4988 ggggggCAGGCATCAAATACA 5008 |||||||||||||||||||| Sbjct 4240 -GGGGGCAGGCATCAAATACA 4259 >seq1120 Length=15482 Score = 152 bits (168), Expect = 6e-33 Identities = 193/259 (75%), Gaps = 30/259 (12%) Strand=Plus/Minus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATA-TG 4810 |||||||||||||||||| ||||| |||||| ||| ||||| ||||||||| || | Sbjct 2040 AATAGTATATTACACTACTAGGGCCGAAAGTATGAATTTCCTACACTGCGCGGAGTAGGG 1981 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCA-AATTTCTGCCCA 4869 |||||||||||||| ||||| || ||| |||||||||||||| || | || ||||| Sbjct 1980 CCCGAGGCGAAGCCAAGGGCTCCACGGCGCGCAGTTCAGGGCTTGCATACCATCGGCCCA 1921 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATTGCGTTGaaa 4929 ||| |||||||||| || ||| | | ||| || || | || Sbjct 1920 TGTGGTGTATACTA-------TA-TAT-AGAT--AAA------TATGCATATCCTT---- 1882 Query 4930 aaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCgggg 4989 || ||||||| |||||||||||| ||||| || |||||||||||||||||| | Sbjct 1881 --TTTTAATGCCTG--CCCGACATTTGCTGCACGCGCAAAGCGAGTGCTGCTGGTC---G 1829 Query 4990 ggggCAGGCATCAAATACA 5008 ||||||||||||||||||| Sbjct 1828 GGGGCAGGCATCAAATACA 1810 >seq614 Length=22531 Score = 129 bits (142), Expect = 7e-26 Identities = 138/176 (78%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 4837 GCACGCAGTTCAGGGCTCTCAAA-TTTCTGCCCATGTAGTGTATACTAGTTTTCTTACTA 4895 || || ||||||||||| ||| | |||| |||| ||| |||||||||| ||||||| || Sbjct 891 GCGCGGAGTTCAGGGCTTTCATACTTTCGGCCCGTGTGGTGTATACTATTTTTCTTCATA 832 Query 4896 TGCGGTCGAAAGTACGTTAAA--AAT-TGCGTTGaaaaaaaTTGATGCCTGCCCCCGACA 4952 ||||||||||||| || | ||| ||| | || |||||||||| |||| Sbjct 831 GCTGGTCGAAAGTACGATAGATAAATATGCATATCCTTTT-TTAATGCCTGCCC--GACA 775 Query 4953 TTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 ||||| |||||||| |||||||||||||||||| ||||||||| |||||||||| Sbjct 774 TTTGCTGCACGAGCAAAGCGAGTGCTGCTGGTC---GGGGGCAGGTATCAAATACA 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55805081398560