Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 170 2e-37
seq3919 113 6e-20
>seq4498
Length=49303
Score = 170 bits (188), Expect = 2e-37
Identities = 239/335 (71%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796
|||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856
|||| |||||||| || || || | | | | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 62857 AATCAAATCGCCCATC---TATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAA 62913
|||| || | || | ||||||||||| | |||| ||||| ||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973
| || || || | || | ||||| ||| || ||||||||||||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033
| || || | || |||||||| || || || ||| || || || ||| |||
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084
Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068
| || |||||||||| |||||| | || || |||
Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 116 bits (128), Expect = 5e-21
Identities = 189/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303
|||| || ||| || || |||||| ||||| || | |||| ||||| | | |
Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171
Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363
| || | | || | || | ||| ||||| |||| ||||||||||||||| || ||||
Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231
Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423
|| || |||| || |||||||| | ||| | || ||||| || || | |||||| ||
Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291
Query 62424 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62483
|| |||||||||||||| || || | | || ||| | | |||| | | ||
Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351
Query 62484 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515
||| |||| |||| | |||| | |||||||||
Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183
|||| ||||| ||| || || || |||||||||| |||||||||||||||| | |
Sbjct 42262 GTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGAG 42321
Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243
||||||| | ||| || | ||| || ||||||||||| | |||||||||||
Sbjct 42322 GACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATCC 42381
Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
|||| || ||| | ||||| | || ||||| || |||||
Sbjct 42382 AAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427
>seq3919
Length=163912
Score = 113 bits (124), Expect = 6e-20
Identities = 159/223 (71%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||| || ||| || |||||| || || || || ||||| | ||||||||||
Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| |||||||| ||||| |||| |||||||| ||||| ||||| |||||||
Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 33502
||| | || ||| || | || ||||| | |||||| || | ||||| | |
Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545
||||||| ||||| || | |||| |||||||| || ||
Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435
Score = 107 bits (118), Expect = 2e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847
|||| |||| |||||||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896
|||| ||||| |||| || ||||| || || ||||| | |||||
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672
Score = 82.4 bits (90), Expect = 1e-10
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059
||| || ||| |||||||||||| || || || ||||| |||||||| || |||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092
| ||||| |||||||||||||| ||||||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622911980122680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |