Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_007034.1
Length=10790
Score E
Sequences producing significant alignments: (Bits) Value
seq4405 109 4e-20
seq4215 100 2e-17
seq1268 98.7 7e-17
seq4523 96.9 2e-16
seq4436 96.9 2e-16
seq4358 96.9 2e-16
>seq4405
Length=68093
Score = 109 bits (120), Expect = 4e-20
Identities = 93/115 (81%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 7903 AAAGTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTT 7962
||||||||||||||||||||| |||||| |||||||| ||||| |||||||||
Sbjct 63211 AAAGTAGGGGAGGGTGGGGCAAGACGGCCCCCCTAAGCCGGTTATTACACGTTGTGGCTT 63152
Query 7963 TCAACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017
|||||||||| ||| || ||||||| | ||||||||| |||| || |||| ||
Sbjct 63151 TCAACCATCAAATCAGTTTACTTTTGACCTATTTCGAATAAATCCATAGACATTT 63097
>seq4215
Length=85153
Score = 100 bits (110), Expect = 2e-17
Identities = 91/114 (80%), Gaps = 3/114 (3%)
Strand=Plus/Minus
Query 7904 AAGTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTT 7963
|||||||| ||| ||||||| |||||| || ||||| ||||| | ||||||||
Sbjct 10154 AAGTAGGGAAGGTTGGGGCAAGACGGCCCCCCAAAGCCGGTTATTACTC---GTGGCTTT 10098
Query 7964 CAACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017
||||||||| |||| || ||||||| | |||||||||||||| ||||||| ||
Sbjct 10097 CAACCATCAAGTCAGTTAACTTTTGACCTATTTCGAACAAATCCATGGACATTT 10044
>seq1268
Length=9653
Score = 98.7 bits (108), Expect = 7e-17
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7906 GTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTCA 7965
|||||||||| ||||||| ||| || ||||| || ||||| | ||||||||||||
Sbjct 3328 GTAGGGGAGGTTGGGGCAAGACGGTCCCCCTAAACCGGTTATTACTCGTTGTGGCTTTCA 3387
Query 7966 ACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGA 8012
||||||| ||| || ||||||| | |||||||||||||| |||||
Sbjct 3388 ACCATCAAATCAGTTTACTTTTGACCTATTTCGAACAAATCCATGGA 3434
>seq4523
Length=55826
Score = 96.9 bits (106), Expect = 2e-16
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 7907 TAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTCAA 7966
||||||||| ||||||| |||| | |||||||| ||||| | ||||||||||||
Sbjct 33435 TAGGGGAGGTTGGGGCAAGACGGCGCCCCTAAGCCGGTTATTACTCGATGTGGCTTTCAA 33376
Query 7967 CCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017
||||| ||| || ||||||| | |||||||||||||| ||||||| ||
Sbjct 33375 CCATCGAATCAGTTTACTTTTGACCTATTTCGAACAAATGCATGGACATTT 33325
>seq4436
Length=404565
Score = 96.9 bits (106), Expect = 2e-16
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 7905 AGTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTC 7964
||||||||||| ||||||| ||||| |||||||| ||||| | |||||||||||
Sbjct 135278 AGTAGGGGAGGTTGGGGCAAGACGGCCTCCCTAAGCCGGTTATTACTCGTTGTGGCTTTC 135337
Query 7965 AACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017
|||||| ||| || ||||||| | ||||| |||||||| ||||||| ||
Sbjct 135338 GACCATCGAATCAGTTTACTTTTGACCTATTTTGAACAAATCCATGGACATTT 135390
>seq4358
Length=429638
Score = 96.9 bits (106), Expect = 2e-16
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 7907 TAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTCAA 7966
||||||||| ||||||| ||||| |||||||| ||||| | ||||| |||||||
Sbjct 59860 TAGGGGAGGTTGGGGCAAGACGGCCACCCTAAGCCGGTTATTACTCGTTGTGTCTTTCAA 59801
Query 7967 CCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017
||||| ||| || ||||||| | |||||||||||||| ||||||| ||
Sbjct 59800 CCATCCAATCAATTTACTTTTGACCTATTTCGAACAAATCCATGGACATTT 59750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 34411048947688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |