Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_007034.1 Length=10790 Score E Sequences producing significant alignments: (Bits) Value seq4405 109 4e-20 seq4215 100 2e-17 seq1268 98.7 7e-17 seq4523 96.9 2e-16 seq4436 96.9 2e-16 seq4358 96.9 2e-16 >seq4405 Length=68093 Score = 109 bits (120), Expect = 4e-20 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 7903 AAAGTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTT 7962 ||||||||||||||||||||| |||||| |||||||| ||||| ||||||||| Sbjct 63211 AAAGTAGGGGAGGGTGGGGCAAGACGGCCCCCCTAAGCCGGTTATTACACGTTGTGGCTT 63152 Query 7963 TCAACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017 |||||||||| ||| || ||||||| | ||||||||| |||| || |||| || Sbjct 63151 TCAACCATCAAATCAGTTTACTTTTGACCTATTTCGAATAAATCCATAGACATTT 63097 >seq4215 Length=85153 Score = 100 bits (110), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 7904 AAGTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTT 7963 |||||||| ||| ||||||| |||||| || ||||| ||||| | |||||||| Sbjct 10154 AAGTAGGGAAGGTTGGGGCAAGACGGCCCCCCAAAGCCGGTTATTACTC---GTGGCTTT 10098 Query 7964 CAACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017 ||||||||| |||| || ||||||| | |||||||||||||| ||||||| || Sbjct 10097 CAACCATCAAGTCAGTTAACTTTTGACCTATTTCGAACAAATCCATGGACATTT 10044 >seq1268 Length=9653 Score = 98.7 bits (108), Expect = 7e-17 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7906 GTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTCA 7965 |||||||||| ||||||| ||| || ||||| || ||||| | |||||||||||| Sbjct 3328 GTAGGGGAGGTTGGGGCAAGACGGTCCCCCTAAACCGGTTATTACTCGTTGTGGCTTTCA 3387 Query 7966 ACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGA 8012 ||||||| ||| || ||||||| | |||||||||||||| ||||| Sbjct 3388 ACCATCAAATCAGTTTACTTTTGACCTATTTCGAACAAATCCATGGA 3434 >seq4523 Length=55826 Score = 96.9 bits (106), Expect = 2e-16 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 7907 TAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTCAA 7966 ||||||||| ||||||| |||| | |||||||| ||||| | |||||||||||| Sbjct 33435 TAGGGGAGGTTGGGGCAAGACGGCGCCCCTAAGCCGGTTATTACTCGATGTGGCTTTCAA 33376 Query 7967 CCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017 ||||| ||| || ||||||| | |||||||||||||| ||||||| || Sbjct 33375 CCATCGAATCAGTTTACTTTTGACCTATTTCGAACAAATGCATGGACATTT 33325 >seq4436 Length=404565 Score = 96.9 bits (106), Expect = 2e-16 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7905 AGTAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTC 7964 ||||||||||| ||||||| ||||| |||||||| ||||| | ||||||||||| Sbjct 135278 AGTAGGGGAGGTTGGGGCAAGACGGCCTCCCTAAGCCGGTTATTACTCGTTGTGGCTTTC 135337 Query 7965 AACCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017 |||||| ||| || ||||||| | ||||| |||||||| ||||||| || Sbjct 135338 GACCATCGAATCAGTTTACTTTTGACCTATTTTGAACAAATCCATGGACATTT 135390 >seq4358 Length=429638 Score = 96.9 bits (106), Expect = 2e-16 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 7907 TAGGGGAGGGTGGGGCAGAGCGGCCCTCCTAAGCCAATTAtttttttttGTGGCTTTCAA 7966 ||||||||| ||||||| ||||| |||||||| ||||| | ||||| ||||||| Sbjct 59860 TAGGGGAGGTTGGGGCAAGACGGCCACCCTAAGCCGGTTATTACTCGTTGTGTCTTTCAA 59801 Query 7967 CCATCAGGTCACTTCACTTTTGTCGTATTTCGAACAAATTTATGGACACTT 8017 ||||| ||| || ||||||| | |||||||||||||| ||||||| || Sbjct 59800 CCATCCAATCAATTTACTTTTGACCTATTTCGAACAAATCCATGGACATTT 59750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34411048947688