Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_007037.1 Length=15058 Score E Sequences producing significant alignments: (Bits) Value seq4405 89.7 5e-14 seq4358 84.2 2e-12 seq1268 84.2 2e-12 seq4436 80.6 3e-11 >seq4405 Length=68093 Score = 89.7 bits (98), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 937 TTTCAGGAGCTTCGCCAAAATTTGGGTGAATTGAGTTAAAGTTGGACGAGAGTAAATCGA 996 |||||| || ||| |||||| | || ||| | | || | || | | |||||| || Sbjct 63081 TTTCAG-AGTTTCATCAAAATGTCTATGGATTTATTCGAAATAGGTCAAAAGTAAACTGA 63139 Query 997 CTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTCTTGCCCCGGT 1056 ||||||||| ||| |||||| | |||||| ||||||||| ||||||||||||||| Sbjct 63140 TTTGATGGTTGAAAGCCACAACGTGTAATAACCGGCTTAGGGGGGCCGTCTTGCCCCACC 63199 Query 1057 CTCCCCTAC 1065 ||||||||| Sbjct 63200 CTCCCCTAC 63208 >seq4358 Length=429638 Score = 84.2 bits (92), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 937 TTTCAGGAGCTTCGCCAAAATTTGGGTGAATTGAGTTAAAGTTGGACGAGAGTAAATCGA 996 |||||| || |||| |||||| | || ||| | || | || | | ||||||| || Sbjct 59734 TTTCAG-AGTTTCGTCAAAATGTCCATGGATTTGTTCGAAATAGGTCAAAAGTAAATTGA 59792 Query 997 CTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTCTTGCCCCGGT 1056 | ||||||| ||| ||||| || |||||| ||||||||| |||||||||||||| Sbjct 59793 TTGGATGGTTGAAAGACACAACGAGTAATAACCGGCTTAGGGTGGCCGTCTTGCCCCAAC 59852 Query 1057 CTCCCCTA 1064 |||||||| Sbjct 59853 CTCCCCTA 59860 >seq1268 Length=9653 Score = 84.2 bits (92), Expect = 2e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 987 AGTAAATCGACTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTC 1046 |||||| || ||||||||| ||| |||||| || |||||| ||| ||||| || ||||| Sbjct 3406 AGTAAACTGATTTGATGGTTGAAAGCCACAACGAGTAATAACCGGTTTAGGGGGACCGTC 3347 Query 1047 TTGCCCCGGTCTCCCCTACAC 1067 ||||||| ||||||||||| Sbjct 3346 TTGCCCCAACCTCCCCTACAC 3326 >seq4436 Length=404565 Score = 80.6 bits (88), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 937 TTTCAGGAGCTTCGCCAAAATTTGGGTGAATTGAGTTAAAGTTGGACGAGAGTAAATCGA 996 |||||| || ||| |||||| | || ||| | ||| | || | | |||||| || Sbjct 135406 TTTCAG-AGTTTCATCAAAATGTCCATGGATTTGTTCAAAATAGGTCAAAAGTAAACTGA 135348 Query 997 CTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTCTTGCCCCGGT 1056 | |||||| ||| |||||| || |||||| ||||||||| |||||||||||||| Sbjct 135347 TTCGATGGTCGAAAGCCACAACGAGTAATAACCGGCTTAGGGAGGCCGTCTTGCCCCAAC 135288 Query 1057 CTCCCCTAC 1065 ||||||||| Sbjct 135287 CTCCCCTAC 135279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48064686220629