Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_007037.1
Length=15058
Score E
Sequences producing significant alignments: (Bits) Value
seq4405 89.7 5e-14
seq4358 84.2 2e-12
seq1268 84.2 2e-12
seq4436 80.6 3e-11
>seq4405
Length=68093
Score = 89.7 bits (98), Expect = 5e-14
Identities = 98/129 (76%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 937 TTTCAGGAGCTTCGCCAAAATTTGGGTGAATTGAGTTAAAGTTGGACGAGAGTAAATCGA 996
|||||| || ||| |||||| | || ||| | | || | || | | |||||| ||
Sbjct 63081 TTTCAG-AGTTTCATCAAAATGTCTATGGATTTATTCGAAATAGGTCAAAAGTAAACTGA 63139
Query 997 CTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTCTTGCCCCGGT 1056
||||||||| ||| |||||| | |||||| ||||||||| |||||||||||||||
Sbjct 63140 TTTGATGGTTGAAAGCCACAACGTGTAATAACCGGCTTAGGGGGGCCGTCTTGCCCCACC 63199
Query 1057 CTCCCCTAC 1065
|||||||||
Sbjct 63200 CTCCCCTAC 63208
>seq4358
Length=429638
Score = 84.2 bits (92), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 937 TTTCAGGAGCTTCGCCAAAATTTGGGTGAATTGAGTTAAAGTTGGACGAGAGTAAATCGA 996
|||||| || |||| |||||| | || ||| | || | || | | ||||||| ||
Sbjct 59734 TTTCAG-AGTTTCGTCAAAATGTCCATGGATTTGTTCGAAATAGGTCAAAAGTAAATTGA 59792
Query 997 CTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTCTTGCCCCGGT 1056
| ||||||| ||| ||||| || |||||| ||||||||| ||||||||||||||
Sbjct 59793 TTGGATGGTTGAAAGACACAACGAGTAATAACCGGCTTAGGGTGGCCGTCTTGCCCCAAC 59852
Query 1057 CTCCCCTA 1064
||||||||
Sbjct 59853 CTCCCCTA 59860
>seq1268
Length=9653
Score = 84.2 bits (92), Expect = 2e-12
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 987 AGTAAATCGACTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTC 1046
|||||| || ||||||||| ||| |||||| || |||||| ||| ||||| || |||||
Sbjct 3406 AGTAAACTGATTTGATGGTTGAAAGCCACAACGAGTAATAACCGGTTTAGGGGGACCGTC 3347
Query 1047 TTGCCCCGGTCTCCCCTACAC 1067
||||||| |||||||||||
Sbjct 3346 TTGCCCCAACCTCCCCTACAC 3326
>seq4436
Length=404565
Score = 80.6 bits (88), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 1/129 (1%)
Strand=Plus/Minus
Query 937 TTTCAGGAGCTTCGCCAAAATTTGGGTGAATTGAGTTAAAGTTGGACGAGAGTAAATCGA 996
|||||| || ||| |||||| | || ||| | ||| | || | | |||||| ||
Sbjct 135406 TTTCAG-AGTTTCATCAAAATGTCCATGGATTTGTTCAAAATAGGTCAAAAGTAAACTGA 135348
Query 997 CTTGATGGTTAAAACCCACAAAGAATAATAATCGGCTTAGGTGGGCCGTCTTGCCCCGGT 1056
| |||||| ||| |||||| || |||||| ||||||||| ||||||||||||||
Sbjct 135347 TTCGATGGTCGAAAGCCACAACGAGTAATAACCGGCTTAGGGAGGCCGTCTTGCCCCAAC 135288
Query 1057 CTCCCCTAC 1065
|||||||||
Sbjct 135287 CTCCCCTAC 135279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 48064686220629
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |