Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 89.7 1e-12
>seq4498
Length=49303
Score = 89.7 bits (98), Expect = 1e-12
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808
||| || ||||| || || || || ||||| || ||||| ||||| || | ||||| |
Sbjct 41315 AGCCCCAATGCCGACTGCATCCACAGCACAAATTCTCGGGAACAATGAATCAATCGAAGC 41256
Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868
| ||| ||||| ||||| ||||||| || | || |||||||||| |||| |||
Sbjct 41255 TTATACCAGCAACGTTTATACACGCCGAGTCTTATCTGGAGAATTTCAAATAGTCAATCC 41196
Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928
| || | | |||||| | | | || |||| ||| | ||||||||| | ||
Sbjct 41195 CCATTTACTAACAGATCTTACTGCTAAAGATCTATGGGATGAAAATATGAAGAACGAGAT 41136
Query 364929 CATCGCCGCTAATGGTTCTGTGCA 364952
|| ||| |||||||||||| ||
Sbjct 41135 TATTGCCAATAATGGTTCTGTTCA 41112
Score = 86.0 bits (94), Expect = 2e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 364120 CTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAA 364179
|| ||||| || |||||| | || ||| |||| || || ||||| || ||| ||||||||
Sbjct 42127 CTGTGGTTAGCTATCATGAACTCTCAGGTTGAAACTGGCACACCATACATGCTGTACAAA 42068
Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239
||| ||||| ||||| || || || ||| || | || ||||| | || || ||
Sbjct 42067 GATCACTGCAATCGCAAATCAAATCAACAGAACGTGGGCACAATCAAATGCAGTAATCTT 42008
Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299
|| || || ||||| ||||| | || || || ||| || ||||| || || |||
Sbjct 42007 TGCACTGAAATTATAGAATATTCAAGCCCTGAAGAAGTTGCTGTTTGTAATCTAGCATCG 41948
Query 364300 ATCGC 364304
|| ||
Sbjct 41947 ATTGC 41943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303278069436986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |