Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4498 89.7 1e-12 >seq4498 Length=49303 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 ||| || ||||| || || || || ||||| || ||||| ||||| || | ||||| | Sbjct 41315 AGCCCCAATGCCGACTGCATCCACAGCACAAATTCTCGGGAACAATGAATCAATCGAAGC 41256 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | ||| ||||| ||||| ||||||| || | || |||||||||| |||| ||| Sbjct 41255 TTATACCAGCAACGTTTATACACGCCGAGTCTTATCTGGAGAATTTCAAATAGTCAATCC 41196 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | || | | |||||| | | | || |||| ||| | ||||||||| | || Sbjct 41195 CCATTTACTAACAGATCTTACTGCTAAAGATCTATGGGATGAAAATATGAAGAACGAGAT 41136 Query 364929 CATCGCCGCTAATGGTTCTGTGCA 364952 || ||| |||||||||||| || Sbjct 41135 TATTGCCAATAATGGTTCTGTTCA 41112 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 364120 CTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAA 364179 || ||||| || |||||| | || ||| |||| || || ||||| || ||| |||||||| Sbjct 42127 CTGTGGTTAGCTATCATGAACTCTCAGGTTGAAACTGGCACACCATACATGCTGTACAAA 42068 Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239 ||| ||||| ||||| || || || ||| || | || ||||| | || || || Sbjct 42067 GATCACTGCAATCGCAAATCAAATCAACAGAACGTGGGCACAATCAAATGCAGTAATCTT 42008 Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299 || || || ||||| ||||| | || || || ||| || ||||| || || ||| Sbjct 42007 TGCACTGAAATTATAGAATATTCAAGCCCTGAAGAAGTTGCTGTTTGTAATCTAGCATCG 41948 Query 364300 ATCGC 364304 || || Sbjct 41947 ATTGC 41943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303278069436986