Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 125 6e-24
>seq3846
Length=171336
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | ||||| ||| | |||||| | |||||||||||| |
Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || ||| | || ||| ||| || |||||||||||||| || || || |||
Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| |||| || | | || ||||| || ||||||| ||| | | || || |||
Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||||||| ||||| || | ||| | || ||||| || | |||||
Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGG 15428
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || ||||||| ||| | || || | |||||||||||| |
Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || || ||||||| |||||||| || || ||||| |||||
Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || ||||||||| || ||||| | | | | || || ||
Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
|||||||||||||| || | |||||||| | || ||||||| |||
Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGA 16111
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || |||||||| ||| | || ||| | ||||| |||||
Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || ||| |||||| |||||||| || || || || || ||
Sbjct 16734 GACACGATTGAAAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAG 16675
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| | || | | ||| || || ||||| |||| | | | | ||||||||||
Sbjct 16674 CAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAAC 16615
Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194
|| || || |||||||| |||||
Sbjct 16614 ATCCAGAAGGAATCTACTCTTCAT 16591
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| | |||||||| | ||||| | |||||||||||
Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || ||| | || ||| ||| ||| ||||| || || || || || || ||
Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| | |||| | || || || || ||||||| | | | ||| |||||
Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||| || || || ||||| ||||
Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGT 15218
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||||||||||||||| | || || | || || |||||
Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || ||| | || || || ||| |||||||| || || ||||| || ||
Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | | || || ||||||||||||| | | | | || || |||
Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||||||||| ||
Sbjct 15702 ATCCAAAAAGAATCCAC 15686
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | ||||| || || || || || || | || ||| ||||||| || ||
Sbjct 17025 AACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGCA 16966
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|| || ||||| | || || |||||| |||||||| || || || || ||
Sbjct 16965 TCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGAC 16906
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| |||||| |||| | | || || || |||||||||| | | | | | |||||||
Sbjct 16905 CAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTAT 16846
Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||| ||||| ||||| || | ||| ||||
Sbjct 16845 AACATCCAAAAGGAATCCACCCTCCATCTAGT 16814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429912300181065
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |