Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_007988.1 Length=7760 Score E Sequences producing significant alignments: (Bits) Value seq706 154 7e-34 >seq706 Length=18111 Score = 154 bits (170), Expect = 7e-34 Identities = 197/263 (75%), Gaps = 29/263 (11%) Strand=Plus/Minus Query 1531 GAGAAGCAGTGGCATAGTGGTAACGTGCCCGGTTCACACCCAGTGGGCCCCGGTTCGATT 1590 |||| ||||||||| |||||||| | |||||| || ||||||| | |||| ||||||||| Sbjct 5115 GAGAGGCAGTGGCACAGTGGTAATGGGCCCGGCTCCCACCCAGCGAGCCCGGGTTCGATT 5056 Query 1591 TTCGATTCCCACCGACACCGATGGATTTTTTCTAAATGTCTCTAACTGCTCTCTCCGTGA 1650 ||| |||||||| |||||||||| |||| |||| | | ||| ||||| ||| Sbjct 5055 -------CCCGCCGACACCAATGGATTTTT-CTAAGTGTCCCAAGCTGTACTCTCTGTGG 5004 Query 1651 TTCGGAACCCACG-TAAAAATGTAGATCCAGGTAGTGAA------AAAACTGTAGAAAGG 1703 ||||||||||||| ||||||||||| |||| ||||| | ||||| || |||| Sbjct 5003 TTCGGAACCCACGTTAAAAATGTAGGTCCA--TAGTGGATGATGGAAAACAGTGGAAA-- 4948 Query 1704 CAAAAGCCAGTCGAGGCAGAACGGAACATAGTGGGATACCCATGTAAAAACCCGAAAAGG 1763 |||| | | | ||| |||| ||| | | |||| ||||||||||| |||| Sbjct 4947 -TAAAGGAAAACAA--TAGA--GGAA-ATA---AAAGAACCATATAAAAACCCGAGAAGG 4897 Query 1764 GTGTGCATGTAAAACTCC-TTAC 1785 || ||||||||||||||| |||| Sbjct 4896 GTATGCATGTAAAACTCCATTAC 4874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24715542316528