Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_007988.1
Length=7760
Score E
Sequences producing significant alignments: (Bits) Value
seq706 154 7e-34
>seq706
Length=18111
Score = 154 bits (170), Expect = 7e-34
Identities = 197/263 (75%), Gaps = 29/263 (11%)
Strand=Plus/Minus
Query 1531 GAGAAGCAGTGGCATAGTGGTAACGTGCCCGGTTCACACCCAGTGGGCCCCGGTTCGATT 1590
|||| ||||||||| |||||||| | |||||| || ||||||| | |||| |||||||||
Sbjct 5115 GAGAGGCAGTGGCACAGTGGTAATGGGCCCGGCTCCCACCCAGCGAGCCCGGGTTCGATT 5056
Query 1591 TTCGATTCCCACCGACACCGATGGATTTTTTCTAAATGTCTCTAACTGCTCTCTCCGTGA 1650
||| |||||||| |||||||||| |||| |||| | | ||| ||||| |||
Sbjct 5055 -------CCCGCCGACACCAATGGATTTTT-CTAAGTGTCCCAAGCTGTACTCTCTGTGG 5004
Query 1651 TTCGGAACCCACG-TAAAAATGTAGATCCAGGTAGTGAA------AAAACTGTAGAAAGG 1703
||||||||||||| ||||||||||| |||| ||||| | ||||| || ||||
Sbjct 5003 TTCGGAACCCACGTTAAAAATGTAGGTCCA--TAGTGGATGATGGAAAACAGTGGAAA-- 4948
Query 1704 CAAAAGCCAGTCGAGGCAGAACGGAACATAGTGGGATACCCATGTAAAAACCCGAAAAGG 1763
|||| | | | ||| |||| ||| | | |||| ||||||||||| ||||
Sbjct 4947 -TAAAGGAAAACAA--TAGA--GGAA-ATA---AAAGAACCATATAAAAACCCGAGAAGG 4897
Query 1764 GTGTGCATGTAAAACTCC-TTAC 1785
|| ||||||||||||||| ||||
Sbjct 4896 GTATGCATGTAAAACTCCATTAC 4874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 24715542316528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |