Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008007.1 Length=15812 Score E Sequences producing significant alignments: (Bits) Value seq1743 107 2e-19 seq2023 95.1 1e-15 seq631 84.2 2e-12 >seq1743 Length=5789 Score = 107 bits (118), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 13561 CTGAAACTCAGTAAAACTACAGCCGTTTGTATCGGCCAGGTTTTCCACAGTTTTCCTAGG 13620 |||| |||| |||||| || ||||| ||||||||||| ||||||| |||||| | | | Sbjct 3926 CTGATACTCGGTAAAAATATAGCCGACTGTATCGGCCAAGTTTTCCGCAGTTTCCGTGTG 3985 Query 13621 CCCGCGCGCAAATGCGATACAATA-AGCGTTAGGAAAGAGTGGCTGTGGGCAACACTCT 13678 ||| || | |||||||||||| || ||| ||||||| ||||||||| | |||||||| Sbjct 3986 CCCTCGTGTAAATGCGATACAGTAGAGCATTAGGAACGAGTGGCTGCGAATAACACTCT 4044 >seq2023 Length=12258 Score = 95.1 bits (104), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 13566 ACTCAGTAAAACTACAGCCGTTTGTATCGGCCAGGTTTTCCACAGTTTTCCTAGGCCCGC 13625 ||| ||| ||| || ||||| | ||||||||| |||||||||||||| | | |||| | Sbjct 2565 ACTAAGTGAAAATATAGCCGATAATATCGGCCAAGTTTTCCACAGTTTCCGTGTGCCCTC 2506 Query 13626 GCGCAAATGCGATACAATA-AGCGTTAGGAAAGAGTGGCTGTGGGCAACACTCT 13678 | | |||||||||||| || ||| |||| || ||||||||| | |||||||| Sbjct 2505 GTGTAAATGCGATACAGTAGAGCATTAGAAATGAGTGGCTGCGAATAACACTCT 2452 >seq631 Length=19912 Score = 84.2 bits (92), Expect = 2e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 13558 CAACTGAAACTCAGTAAAACTACAGCCGTTTGTATCGGCCAGGTTTTCCACAGTTTTCCT 13617 || || ||||||||||||| || ||||| ||||||||||||||||||| ||||| ||| Sbjct 17355 CACCTAAAACTCAGTAAAAATATAGCCGACTGTATCGGCCAGGTTTTCCGGAGTTTCCCT 17414 Query 13618 AGGCCCGCGCGCAAAT 13633 | |||| || |||||| Sbjct 17415 ATGCCCTCGTGCAAAT 17430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50477360037975