Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008008.1 Length=7604 Score E Sequences producing significant alignments: (Bits) Value seq706 197 7e-47 >seq706 Length=18111 Score = 197 bits (218), Expect = 7e-47 Identities = 208/263 (79%), Gaps = 18/263 (7%) Strand=Plus/Minus Query 1168 GGAGAGGCAGTGGCATAGTGGTAACGCGCCCGACTCACAACCGGTGAGCCCGGGTTTCGA 1227 ||||||||||||||| |||||||| | ||||| ||| || || | ||||||||||| ||| Sbjct 5116 GGAGAGGCAGTGGCACAGTGGTAATGGGCCCGGCTCCCACCCAGCGAGCCCGGGTT-CGA 5058 Query 1228 TACCAGCCGACACCAATGGATTTTATCCAAGTGTCTAAATAAAACTGTTCTCTCTGTGGT 1287 | || ||||||||||||||||||| || ||||||| || |||| ||||||||||| Sbjct 5057 TTCCCGCCGACACCAATGGATTTT-TCTAAGTGTCCCAAG----CTGTACTCTCTGTGGT 5003 Query 1288 TCGGAATCCATGT-AAAAATGTAGGTCCAG-GTGGTAATATGGAAAAACAATTGTGGAAA 1345 |||||| ||| || ||||||||||||||| |||| | |||||||| || ||||||| Sbjct 5002 TCGGAACCCACGTTAAAAATGTAGGTCCATAGTGG-ATGATGGAAAA-CA---GTGGAAA 4948 Query 1346 AAGTAAGGGAATTGCAAAGAGCGGAAAGTACCACCCCATGTAAAAACCCGAAAAGGGTAT 1405 | |||| || || || ||||| | |||| ||||||||||| |||||||| Sbjct 4947 TA--AAGGAAAAC---AATAGAGGAAATAAAAGAACCATATAAAAACCCGAGAAGGGTAT 4893 Query 1406 GCATGTAAAACTCCATACCTACT 1428 |||||||||||||||| ||||| Sbjct 4892 GCATGTAAAACTCCATTACTACT 4870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24216367717696