Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008008.1
Length=7604
Score E
Sequences producing significant alignments: (Bits) Value
seq706 197 7e-47
>seq706
Length=18111
Score = 197 bits (218), Expect = 7e-47
Identities = 208/263 (79%), Gaps = 18/263 (7%)
Strand=Plus/Minus
Query 1168 GGAGAGGCAGTGGCATAGTGGTAACGCGCCCGACTCACAACCGGTGAGCCCGGGTTTCGA 1227
||||||||||||||| |||||||| | ||||| ||| || || | ||||||||||| |||
Sbjct 5116 GGAGAGGCAGTGGCACAGTGGTAATGGGCCCGGCTCCCACCCAGCGAGCCCGGGTT-CGA 5058
Query 1228 TACCAGCCGACACCAATGGATTTTATCCAAGTGTCTAAATAAAACTGTTCTCTCTGTGGT 1287
| || ||||||||||||||||||| || ||||||| || |||| |||||||||||
Sbjct 5057 TTCCCGCCGACACCAATGGATTTT-TCTAAGTGTCCCAAG----CTGTACTCTCTGTGGT 5003
Query 1288 TCGGAATCCATGT-AAAAATGTAGGTCCAG-GTGGTAATATGGAAAAACAATTGTGGAAA 1345
|||||| ||| || ||||||||||||||| |||| | |||||||| || |||||||
Sbjct 5002 TCGGAACCCACGTTAAAAATGTAGGTCCATAGTGG-ATGATGGAAAA-CA---GTGGAAA 4948
Query 1346 AAGTAAGGGAATTGCAAAGAGCGGAAAGTACCACCCCATGTAAAAACCCGAAAAGGGTAT 1405
| |||| || || || ||||| | |||| ||||||||||| ||||||||
Sbjct 4947 TA--AAGGAAAAC---AATAGAGGAAATAAAAGAACCATATAAAAACCCGAGAAGGGTAT 4893
Query 1406 GCATGTAAAACTCCATACCTACT 1428
|||||||||||||||| |||||
Sbjct 4892 GCATGTAAAACTCCATTACTACT 4870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 24216367717696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |