Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3846 102 7e-17 >seq3846 Length=171336 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| | |||| ||| | || || |||||||| ||||||||||| | | Sbjct 15428 CCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGAC 15487 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || || | || || || ||| | || || ||||||||||| || Sbjct 15488 AAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGA 15547 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || |||||| || || | | | |||||| || ||| Sbjct 15548 ATGCCTTCTTTGTCTTGGATTTTTGCT--TTTACGTTCTCAATTGTGTCGGAGGCCTCGA 15605 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| |||||||| || || || || || |||||||| ||||| Sbjct 15606 CTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||||||||| |||| || || | ||||| ||||| || ||||| ||||||||||| | Sbjct 15655 CCCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGA 15714 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | |||||| || ||| | || | ||||| ||||| ||| Sbjct 15715 AAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 15774 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||||| |||||| | | | |||||| | ||| Sbjct 15775 AATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAAC 15834 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| || | |||||||||||||| ||||| Sbjct 15835 CTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| ||| || || |||||||| || ||||||||||| | Sbjct 14972 CCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 15031 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||||| || || | || | || ||| ||||| ||| Sbjct 15032 AGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGA 15091 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| |||| ||| || | | | ||||| | ||| Sbjct 15092 ATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACC 15151 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 15152 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||| | || |||| || || || || || || || || |||||||| | Sbjct 15883 CCCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGA 15942 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| |||| || | || ||||| ||| | || | ||||| ||||| ||| Sbjct 15943 TAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 16002 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||||| | ||| || | | | ||||||| || ||| Sbjct 16003 AATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAAC 16062 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||||||||||| || || || || || || ||||| |||||| Sbjct 16063 TTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405065669903770