Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 170 2e-37
seq3919 116 5e-21
>seq4498
Length=49303
Score = 170 bits (188), Expect = 2e-37
Identities = 239/335 (71%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651
|||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711
|||| |||||||| || || || | | | | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 62712 AATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 62768
|||| || | || | ||||||||||| | |||| ||||| ||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 62769 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62828
| || || || | || | ||||| ||| || ||||||||||||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 62829 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 62888
| || || | || |||||||| || || || ||| || || || ||| |||
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084
Query 62889 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 62923
| || |||||||||| |||||| | || || |||
Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 116 bits (128), Expect = 5e-21
Identities = 189/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158
|||| || ||| || || |||||| ||||| || | |||| ||||| | | |
Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171
Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218
| || | | || | || | ||| ||||| |||| ||||||||||||||| || ||||
Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231
Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278
|| || |||| || |||||||| | ||| | || ||||| || || | |||||| ||
Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291
Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62338
|| |||||||||||||| || || | | || ||| | | |||| | | ||
Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351
Query 62339 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370
||| |||| |||| | |||| | |||||||||
Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383
>seq3919
Length=163912
Score = 116 bits (128), Expect = 5e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204
|||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 33264
|||| ||||| | ||||||| || || || || ||||| | ||||| | | ||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 33265 TTGGTTCCA 33273
||||||||
Sbjct 143684 GTGGTTCCA 143692
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416
||| || ||| |||||||||||| || || || ||||| |||||||| ||||||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449
|| ||||| ||||||||||||||||| |||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Score = 89.7 bits (98), Expect = 7e-13
Identities = 154/223 (69%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
||||||| || ||| | |||||| || || || || ||||| | ||||||||||
Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| |||||||| || || |||| ||||| || ||||| ||||| |||||||
Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332
Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 32859
||| | || ||| || | || ||||| | |||||| || | ||||| | |
Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392
Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902
||||||| ||||| || | | || || ||||| || ||
Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633596176030800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |