Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4498 170 2e-37 seq3919 116 5e-21 >seq4498 Length=49303 Score = 170 bits (188), Expect = 2e-37 Identities = 239/335 (71%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 |||| |||||||| || || || | | | | |||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 62712 AATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 62768 |||| || | || | ||||||||||| | |||| ||||| |||||||||| Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 62769 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62828 | || || || | || | ||||| ||| || ||||||||||||||||| || |||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 62829 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 62888 | || || | || |||||||| || || || ||| || || || ||| ||| Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084 Query 62889 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 62923 | || |||||||||| |||||| | || || ||| Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119 Score = 116 bits (128), Expect = 5e-21 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158 |||| || ||| || || |||||| ||||| || | |||| ||||| | | | Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171 Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218 | || | | || | || | ||| ||||| |||| ||||||||||||||| || |||| Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231 Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278 || || |||| || |||||||| | ||| | || ||||| || || | |||||| || Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291 Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62338 || |||||||||||||| || || | | || ||| | | |||| | | || Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351 Query 62339 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370 ||| |||| |||| | |||| | ||||||||| Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383 >seq3919 Length=163912 Score = 116 bits (128), Expect = 5e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 |||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 33264 |||| ||||| | ||||||| || || || || ||||| | ||||| | | ||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 33265 TTGGTTCCA 33273 |||||||| Sbjct 143684 GTGGTTCCA 143692 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| || ||| |||||||||||| || || || ||||| |||||||| |||||||| Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 || ||||| ||||||||||||||||| ||||| Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||| || ||| | |||||| || || || || ||||| | |||||||||| Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| |||||||| || || |||| ||||| || ||||| ||||| ||||||| Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 32859 ||| | || ||| || | || ||||| | |||||| || | ||||| | | Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||||||| ||||| || | | || || ||||| || || Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633596176030800