Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 147 2e-30
seq4480 102 7e-17
seq2212 102 7e-17
seq713 84.2 2e-11
>seq3846
Length=171336
Score = 147 bits (162), Expect = 2e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || ||| ||||||| | ||||| ||| | ||
Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| |||| | ||| |||||||| || ||||| || || ||
Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAA-GACAAAGAGGGAATTCCTCCAGATCA 16220
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| |||||||| || | ||||| | || ||| || || |||||
Sbjct 16219 GCAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAA 16160
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||||||||||||||||| |||||||||| || | || ||||| ||||
Sbjct 16159 TATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGAA 16110
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||| | || || ||| |||| || | ||||| ||| | ||
Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | || ||||||| ||||||||||| |||||||| ||||||
Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||| || || || | ||||||| || || || || |||||
Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| ||||| || ||||| | || ||||||| | |||||
Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGG 15428
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || || || || || || | ||||| | || || ||| | ||
Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| ||| ||||| | |||| ||| |||||||| || ||||| || |||||
Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAG-GACAAAGAGGGAATTCCTCCAGACCA 15764
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || |||||| | ||||||| |||||| | || |||||
Sbjct 15763 GCAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAA 15704
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| |||||||||||||| || || | || || |||| |||||||
Sbjct 15703 CATCCAAAAAGAATCCACCCTGCACCTTGTCCTTCGGCTGCGAGGAGG 15656
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || ||| | || || || | || || | ||||| ||| | |||
Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| |||| ||||||| ||| ||||| || || || ||||| |||||
Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAA-GACAAGGAGGGAATCCCACCAGACCA 15308
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | |||||||| || ||||| | ||||||| || ||| | ||| || ||
Sbjct 15307 GCAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAA 15248
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||| || ||||| || ||| |||| ||
Sbjct 15247 TATTCAAAAGGAGTCCACCCTTCATCTAGTTCT 15215
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || |||||||| ||| | ||||| | || || ||| |||||
Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| |||||| ||||||||||| ||||| || |||||
Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || || ||||| | ||||||| || || | || |||||
Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||||| || || || || || ||| | || || ||||
Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGGCT 14981
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| || || || ||| | || || | ||||| ||| | ||
Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || ||||| | |||| ||| ||||| || || || ||||| |||||
Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAA-GACAAGGAGGGAATCCCACCAGACCA 16448
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || |||||||||||||| | || |||| || || | ||||||||
Sbjct 16447 GCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAA 16388
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || |||||||| || || ||| | || ||
Sbjct 16387 CATCCAGAAAGAATCAACTCTTCATCTTGTCCT 16355
>seq4480
Length=409792
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || |||||||| |||| || || ||||||| | || |||||| ||
Sbjct 402671 ACAATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCG 402730
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || ||||| | ||| |||||| |||||||| || || || || |||
Sbjct 402731 TCCGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGAC 402790
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || ||||||||||||||| | || |||| || ||| | || |||
Sbjct 402791 CAGCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTAC 402850
Query 25176 AATATTCAAAA 25186
|| || || ||
Sbjct 402851 AACATCCAGAA 402861
>seq2212
Length=252600
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || |||||||| |||| || || ||||||| | || |||||| ||
Sbjct 250481 ACAATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCG 250422
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || ||||| | ||| |||||| |||||||| || || || || |||
Sbjct 250421 TCCGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGAC 250362
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || ||||||||||||||| | || |||| || ||| | || |||
Sbjct 250361 CAGCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTAC 250302
Query 25176 AATATTCAAAA 25186
|| || || ||
Sbjct 250301 AACATCCAGAA 250291
>seq713
Length=327371
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||| ||||| || ||||| | |||||||| ||||| ||| | || |||| |
Sbjct 311240 AGGGATTCCCCCTGATCAGCAGCGTTTGATTTTTGCTGGCAAGCAACTTGAGGATGGAAG 311299
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| | |||||||||||| || |||||||| ||||| || || || ||
Sbjct 311300 AACTCTTTCCGATTACAATATCCAGAAAGAATCTACGCTTCACTTGGTACT 311350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433304113200245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |