Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4136 109 6e-19
seq1113 109 6e-19
seq3919 102 9e-17
>seq4136
Length=465617
Score = 109 bits (120), Expect = 6e-19
Identities = 72/77 (94%), Gaps = 2/77 (3%)
Strand=Plus/Minus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||| ||||| |||||||||| || ||||||||||
Sbjct 461515 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 461456
Query 126327 GTTCGAACCCCACACCT 126343
|||||||||||||||||
Sbjct 461455 GTTCGAACCCCACACCT 461439
>seq1113
Length=615210
Score = 109 bits (120), Expect = 6e-19
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||| ||||| |||||||||| || ||||||||||
Sbjct 432012 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 432071
Query 126327 GTTCGAACCCCACACCTGACAAAT 126350
||||||||||||||| | |||||
Sbjct 432072 GTTCGAACCCCACACTTAGCAAAT 432095
>seq3919
Length=163912
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638
|||| || | ||| ||||||||||| |||||||| || |||||||| ||||| ||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698
||| ||||| | ||||||| || |||||||| || | | ||| |||||| | || |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 93699 ACGGCTCTAGTTGTGG 93714
|| || |||| |||
Sbjct 143684 GTGGTTCCAGTTCTGG 143699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556829316482520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |