Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 98.7 2e-15
seq2424 95.1 2e-14
seq1735 95.1 2e-14
seq4117 91.5 3e-13
seq2724 89.7 1e-12
seq968 87.8 4e-12
seq2135 84.2 4e-11
>seq1180
Length=303968
Score = 98.7 bits (108), Expect = 2e-15
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 142492 GGTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTC 142551
|||| | | ||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 48870 GGTGTTCACATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTC 48929
Query 142552 GTGGGTTCGAGCCCCACATCGGGC 142575
||||||||||||||||| | ||||
Sbjct 48930 GTGGGTTCGAGCCCCACGTTGGGC 48953
>seq2424
Length=231558
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 86385 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 86326
Query 142563 CCCCACATCGGGCAGAA 142579
|||||| | |||| |||
Sbjct 86325 CCCCACGTTGGGCGGAA 86309
>seq1735
Length=267946
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 80230 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 80171
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 80170 AGCCCCACGTTGGGC 80156
>seq4117
Length=108433
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 45453 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 45394
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 45393 CCCCACGTTGGGC 45381
>seq2724
Length=217715
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 114576 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 114517
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 114516 CCCACGTTGGGC 114505
>seq968
Length=309140
Score = 87.8 bits (96), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| |
Sbjct 201313 GTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 201372
Query 142113 CCCGCCAGAGA 142123
||| |||| ||
Sbjct 201373 CCCACCAGGGA 201383
>seq2135
Length=247202
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109
|||||| || ||||||| ||| ||||||||||||||||||||||||||| | |||||||
Sbjct 168378 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCG 168319
Query 142110 ACCCCCGCCAGAGA 142123
| |||| | || ||
Sbjct 168318 ATCCCCACAAGGGA 168305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027777235893843
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |