Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3846 102 6e-17 >seq3846 Length=171336 Score = 102 bits (112), Expect = 6e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || ||||||||||||||| ||||| || ||| | Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 21894 GAAACGGTGGCCGATCTTAA--GCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 || || | | || | ||| ||||||| | || ||||| || | || | ||| Sbjct 15594 GACACAATTGA-GAACGTAAAAGCAAAAA-TCCAAGACAAAGAAGGCATTCCACCAGACC 15537 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 ||||| |||| ||||||||||| || || || |||||| | ||| || | || |||| Sbjct 15536 AACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACA 15477 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||| |||||||| || | ||| |||| ||| | | || ||||| Sbjct 15476 ACATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGG 15428 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || ||||| ||||||||||| ||| | ||| || || | Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||| || || |||||||| | || | |||| Sbjct 16734 GACACGATTGAAAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAG 16675 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| || ||||| || || ||| ||| | ||||||| || Sbjct 16674 CAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAAC 16615 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||||||||||||| |||| | ||| | || ||||| Sbjct 16614 ATCCAGAAGGAATCTACTCTTCATCTGGTCCTTCGTCTCCGCGGAGG 16568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || |||| || | || ||||||||||| || ||||| || ||| | Sbjct 16111 AATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTC 16052 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| || || ||||| | ||| | |||| Sbjct 16051 CGACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 15992 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||| || || ||||| | || | | || ||||| Sbjct 15991 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAA 15932 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||| |||||||||||||| |||| | || |||| || || Sbjct 15931 TATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGACTACGTGGTGG 15884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358105058706142