Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008921.1
Length=3498
Score E
Sequences producing significant alignments: (Bits) Value
seq680 187 6e-44
seq1074 185 2e-43
seq1879 149 1e-32
seq1668 105 1e-19
seq870 82.4 2e-12
>seq680
Length=350318
Score = 187 bits (206), Expect = 6e-44
Identities = 272/379 (72%), Gaps = 10/379 (3%)
Strand=Plus/Plus
Query 3106 TATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATTCT 3165
|||| || ||||||||||||||||| | ||| ||| ||| | |||||||| | ||||
Sbjct 78284 TATGGGGCATTCCAGCTGAACTCGACCCGGTTTGGACCTCATGGATTCGGATTCAGTTCT 78343
Query 3166 CAAtttttttCCGAAATCCTACTAGCCCGCTCAAGAAAGTTTTAGATTTTTTAANNNNNN 3225
||||||||||| |||| ||| |||||| | || | | | | | |||||||
Sbjct 78344 CAATTTTTTTC-RAAATTCTATTAGCCCACAAAA-AGACTCTCA-ATTTTTTTCAGATTT 78400
Query 3226 NNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTTAAAAATATGA 3285
|||||| | |||| | | | || |||||||| ||||||| ||| ||||
Sbjct 78401 TTAAAATCAAATCATTTCGAGTTATGATTTTTTGTTCAAATCACCTTTTTTCAAAAATGA 78460
Query 3286 GTCTTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTTTTCATCAAAA 3345
||| || | |||||| || ||| || ||| | |||||| ||||||| ||| ||||
Sbjct 78461 CATTTTTCAAGAGGACGTAACGCAAAGACGTGAGGTCTGACAATAAAATTT-CATAAAAA 78519
Query 3346 TCAAGTGCACAGTTTGGTTCGAAA-TTTGATTGAAAAAATGCTGAAAATAAGTGCAACAA 3404
| || | | || ||| | | ||| ||| || |||||||| |||||| | | ||||
Sbjct 78520 TGAAATACTCATTTTCGACCCAAAGTTTCATAAAAAAAATGTTGAAAAAATCTACAACCT 78579
Query 3405 CACTTCAAAGGTGAAttttttttCATCTTGAAGTGaaaaaaaTGGATTTTTCGTTCAGTA 3464
| | ||||||||| |||||||| || | || | |||||||| |||||||||| ||||
Sbjct 78580 CCC--CAAAGGTGA--TTTTTTTCTTCCTAAAAT-AAAAAAATTGATTTTTCGTCAAGTA 78634
Query 3465 CGTCATAATTAATTTGGCT 3483
||||| |||||||||||||
Sbjct 78635 CGTCACAATTAATTTGGCT 78653
Score = 77.0 bits (84), Expect = 7e-11
Identities = 65/79 (82%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 3104 CATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATT 3163
|||||| || ||||||||||||||||| | ||| ||| ||| | |||||||| | ||
Sbjct 80067 CATATGGGGCATTCCAGCTGAACTCGACCCGGTTTGGACCTCATGGATTCGGATTCAGTT 80008
Query 3164 CTCAAtttttttCCGAAAT 3182
|||||||||||| ||||||
Sbjct 80007 CTCAATTTTTTT-CGAAAT 79990
>seq1074
Length=14548
Score = 185 bits (204), Expect = 2e-43
Identities = 300/424 (71%), Gaps = 32/424 (8%)
Strand=Plus/Minus
Query 3081 ACACCATATGCGCTTT--CTGAATGCATATGAGGTATTCCAGCTGAACTCGAGCTACTTT 3138
||||||| | | ||| || ||| |||| | ||||||||||||||||| | |||
Sbjct 9040 ACACCATCTTAGATTTTGCTCAATATTTATGGGAAATTCCAGCTGAACTCGACCCGGTTT 8981
Query 3139 CGACTTCACCGGTTCGGATTTAATTCTCAAtttttttCCGAAATCCTACTAGCCCGCTCA 3198
| | ||| | |||||||| | ||||||||||||||| ||||| ||| |||||| | |
Sbjct 8980 GGCCCTCATGGATTCGGATTCAGTTCTCAATTTTTTTC-GAAATTCTATTAGCCCACAAA 8922
Query 3199 A-GA-----AAGTTTT--AGATTTTTTAANNNNNNNNNNNATCAAACGTTCACGAGCTGT 3250
| || || |||| ||||||| || ||||||| | |||| | |
Sbjct 8921 AAGACCCTCAATTTTTTCAGATTTTCAAA-----------ATCAAACCATTTCGAGTTAT 8873
Query 3251 AACTTCCGTTTCAAATCGCCTTTTTAAAAATATGAGTCTTTCCATGGAGACGTAGCGAAA 3310
| || |||||||| ||||| | ||| |||| ||| || | |||||| | ||
Sbjct 8872 GATTTTTTGTTCAAATCACCTTTCTTCAAAAATGACATTTTTCAAGAGGACGTAATGCAA 8813
Query 3311 AAACCTGAAGGTTGACaaaaaaaTTTTCATCAAAATCAAGTGCACAGTTTGGTTCGAAAT 3370
|||| ||| | |||||| ||||||| ||| ||||| || | | || |||| || || |
Sbjct 8812 AAACGTGAGGTCTGACAATAAAATTT-CATAAAAATAAAATACTCATTTTGACTCAAAGT 8754
Query 3371 TTGATTGAAAAAATGCTGAAAATAAGTGCAACAACACTTC--AAAGGTGAAttttttttC 3428
|| | |||||||| |||||| | || |||| |||| |||||||| ||||||||
Sbjct 8753 TTCGTAAAAAAAATGTTGAAAAAATGTACAAC----CTTCCCAAAGGTGA--TTTTTTTC 8700
Query 3429 ATCTTGAAGTGaaaaaaaTGGATTTTTCGTTCAGTACGTCATAATTAATTTGGCTGAAAA 3488
|| | || | ||||||||| ||||||||| ||||||||| ||||||||||||| ||
Sbjct 8699 TTCCTAAAATAAAAAAAATG-ATTTTTCGTCAAGTACGTCACAATTAATTTGGCTCAATT 8641
Query 3489 TTTT 3492
||||
Sbjct 8640 TTTT 8637
Score = 163 bits (180), Expect = 6e-37
Identities = 272/387 (70%), Gaps = 26/387 (7%)
Strand=Plus/Plus
Query 3105 ATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATTC 3164
||| | || ||||||||||||||||| ||| ||| ||| | |||||||| | |||
Sbjct 7200 ATAAGGGGCATTCCAGCTGAACTCGACTCGGTTTGGACCTCATGGATTCGGATTCAGTTC 7259
Query 3165 TCAAtttttttCCGAAATCCTACTAGCCCGCTCAA-GA-----AAGTTTT--AGATTTTT 3216
|||||||||||| |||| ||| || ||| | || || || |||| ||||||||
Sbjct 7260 TCAATTTTTTTCA-AAATTCTATTAACCCACAAAAAGACCCTCAATTTTTTCAGATTTTT 7318
Query 3217 TAANNNNNNNNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTTA 3276
|| ||||||| | ||| | | | || |||||||| ||||| |
Sbjct 7319 AAA-----------ATCAAACCATTTTGAGTTATGATTTTTTGTTCAAATCACCTTTCTT 7367
Query 3277 AAAATATGAGTCTTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTTT 3336
||| |||| ||| || | |||||| || |||||| ||| | |||||| ||||||
Sbjct 7368 CAAAAATGACATTTTTCAAGAGGACGTAACGCAAAAACGTGAGGTCTGACAATCAAATTT 7427
Query 3337 TCATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATTGAAAAAATGCTGAAAATAAG 3396
| | ||||| || | | || | || | || ||| || |||||||| |||||| |
Sbjct 7428 CC-TAAAAATAAAATACTCATTCTGACCCAAAGTTTCATGAAAAAAATGTTGAAAAAATC 7486
Query 3397 TGCAACAACACTTCAAAGGTGAAttttttttCATCTTGAAGTGaaaaaaaTGGATTTTTC 3456
| |||| | | ||||||||| |||||||| || | || | ||||||||| |||||||
Sbjct 7487 TACAACCTCCC--CAAAGGTGA--TTTTTTTCTTCCTAAAATAAAAAAAATG-ATTTTTC 7541
Query 3457 GTTCAGTACGTCATAATTAATTTGGCT 3483
|| ||||||||| |||||||||||||
Sbjct 7542 GTCAAGTACGTCACAATTAATTTGGCT 7568
>seq1879
Length=273905
Score = 149 bits (164), Expect = 1e-32
Identities = 268/385 (70%), Gaps = 15/385 (4%)
Strand=Plus/Minus
Query 3102 TGCATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAA 3161
|||||||| || |||| |||||||||||| | ||||| ||| ||| ||||| |||
Sbjct 252820 TGCATATGGGGCATTCTAGCTGAACTCGACCCACTTTTGACCTCATGTGTTCGAATTCCG 252761
Query 3162 TTCTCAAtttttttCCGAAATCCTACTAGCCCGCTCAAGAAAGTTTTAGATTTTTTAANN 3221
||||||||||||| ||||||| |||||||||| | ||||| | || ||||||| |
Sbjct 252760 TTCTCAATTTTTT-CCGAAATTCTACTAGCCCAC--AAGAAGACTCTAAATTTTTTCAGA 252704
Query 3222 NNNNNNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTTAAAAAT 3281
|| ||| | | |||| ||| | || | |||||||| || ||||| |
Sbjct 252703 TTTTTTAA-ATTAAATGGTTGCGAGTTGTGATTTTC-TTTCAAATTGCGTTTTTTTTTTT 252646
Query 3282 ATGAGTC----TTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTTTT 3337
| | | ||| || | ||||||||| | |||| || ||| ||| ||||||
Sbjct 252645 TTTAATTACATTTTTCAAGAGGACGTAGCGCAGAAACGCGACCTTTGGCAATTAAATTT- 252587
Query 3338 CATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATTGAAAAAATGCTGAAAATAAGT 3397
||| |||| || | | | |||| || || ||| | ||||||| ||| | | |
Sbjct 252586 CATAGAAATAAAATACTGAATTTGACTCAAAGTTTCGTAAAAAAAATTACGAAGAAATCT 252527
Query 3398 GCAACAACACTTCAAAGGTGAAttttttttCATCTTGAAGTGaaaaaaaTGGATTTTTCG 3457
|||| | | |||| |||| |||||||| || | |||| |||||||| ||||||||
Sbjct 252526 ACAACCTCCC--CAAAAGTGA--TTTTTTTCTTCCTAAAGT-AAAAAAATTGATTTTTCC 252472
Query 3458 TTCAGTACGTCATAATTAATTTGGC 3482
| |||| |||||||||||||||||
Sbjct 252471 TCAAGTATGTCATAATTAATTTGGC 252447
>seq1668
Length=588872
Score = 105 bits (116), Expect = 1e-19
Identities = 202/295 (68%), Gaps = 22/295 (7%)
Strand=Plus/Plus
Query 3105 ATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATTC 3164
||||| |||||||||||||||||||| | ||| ||| ||| | |||||||| | |||
Sbjct 295104 ATATGGGGTATTCCAGCTGAACTCGACCCGGTTTGGACCTCATGGATTCGGATTCAGTTC 295163
Query 3165 TCAAtttttttCCGAAATCCTACTAGCCCGC-TCAAGA-----AAGT---TTTAGATTTT 3215
||||||||||| |||||| ||| || ||| | |||| || | || |||||||
Sbjct 295164 TCAATTTTTTT-CGAAATTCTATTAACCCACAAAAAGACGCTCAATTTTATTGAGATTTT 295222
Query 3216 TTAANNNNNNNNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTT 3275
| || ||||||| | | || | | | || |||||||| | | |||
Sbjct 295223 TAAA-----------ATCAAACCATTTCTAGTTATGATTTTTTGTTCAAATCACTTGTTT 295271
Query 3276 AAAAATATGAGTCTTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTT 3335
||| |||| ||| || | |||||| || |||||| ||| | |||||| ||| |
Sbjct 295272 TCAAAAATGACATTTTTCAAGAGGACGTAACGCAAAAACTTGAGGTCTGACAATGAAA-T 295330
Query 3336 TTCATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATTGAAAAAATGCTGAA 3390
||||| ||||| || | | || || | | || ||| || |||||||| ||||
Sbjct 295331 TTCATGAAAATAAAATACTCATTTCGACCCAAAGTTTCATAAAAAAAATGTTGAA 295385
>seq870
Length=16763
Score = 82.4 bits (90), Expect = 2e-12
Identities = 168/245 (69%), Gaps = 15/245 (6%)
Strand=Plus/Minus
Query 3260 TTCAAATCGCCTTTTTAAAAATATGAGTCTTTCCATGGAGACGTAGCGAAAAAACCTGAA 3319
||||||| ||| | | |||| |||| | | || || ||||| | | |||||| |||
Sbjct 10306 TTCAAATAACCTCTCTTAAAAAATGACATTCTTCAAGGGGACGTGGGGCAAAAACGTGAG 10247
Query 3320 GGTTGACaaaaaaaTTTTCATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATT--- 3376
| |||||| |||||||| ||||| | || ||| | ||| |||||||||||| |||
Sbjct 10246 GTCTGACAATAAAATTTTGTTCAAA-TAAAATGCTCGGTTCGGTTCGAAATTTCATTATA 10188
Query 3377 ---GAAAAAATGCTGAAAATAAGTGCAACAACACTTCAAAGGTGAAttttttttCATC-- 3431
|||||||| | | | |||| || || | ||||||||| ||||| || |
Sbjct 10187 AAAAAAAAAATG--GTAGAAAAGTCTAAAAATTCCGCAAAGGTGA--TTTTTCCCACCCA 10132
Query 3432 -TTGAAGTGaaaaaaaTGGATTTTTCGTTCAGTACGTCATAATTAATTTGGCTGAAAATT 3490
|| |||||||| ||||||||| ||| | |||| ||| ||| ||| | |||
Sbjct 10131 AGGTAAAAGAAAAAAAATGATTTTTCG-TCAACGCATCATGATTGATTGGGCCCGATATT 10073
Query 3491 TTCTT 3495
|| ||
Sbjct 10072 TTTTT 10068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 11081051789785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |