Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008921.1 Length=3498 Score E Sequences producing significant alignments: (Bits) Value seq680 187 6e-44 seq1074 185 2e-43 seq1879 149 1e-32 seq1668 105 1e-19 seq870 82.4 2e-12 >seq680 Length=350318 Score = 187 bits (206), Expect = 6e-44 Identities = 272/379 (72%), Gaps = 10/379 (3%) Strand=Plus/Plus Query 3106 TATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATTCT 3165 |||| || ||||||||||||||||| | ||| ||| ||| | |||||||| | |||| Sbjct 78284 TATGGGGCATTCCAGCTGAACTCGACCCGGTTTGGACCTCATGGATTCGGATTCAGTTCT 78343 Query 3166 CAAtttttttCCGAAATCCTACTAGCCCGCTCAAGAAAGTTTTAGATTTTTTAANNNNNN 3225 ||||||||||| |||| ||| |||||| | || | | | | | ||||||| Sbjct 78344 CAATTTTTTTC-RAAATTCTATTAGCCCACAAAA-AGACTCTCA-ATTTTTTTCAGATTT 78400 Query 3226 NNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTTAAAAATATGA 3285 |||||| | |||| | | | || |||||||| ||||||| ||| |||| Sbjct 78401 TTAAAATCAAATCATTTCGAGTTATGATTTTTTGTTCAAATCACCTTTTTTCAAAAATGA 78460 Query 3286 GTCTTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTTTTCATCAAAA 3345 ||| || | |||||| || ||| || ||| | |||||| ||||||| ||| |||| Sbjct 78461 CATTTTTCAAGAGGACGTAACGCAAAGACGTGAGGTCTGACAATAAAATTT-CATAAAAA 78519 Query 3346 TCAAGTGCACAGTTTGGTTCGAAA-TTTGATTGAAAAAATGCTGAAAATAAGTGCAACAA 3404 | || | | || ||| | | ||| ||| || |||||||| |||||| | | |||| Sbjct 78520 TGAAATACTCATTTTCGACCCAAAGTTTCATAAAAAAAATGTTGAAAAAATCTACAACCT 78579 Query 3405 CACTTCAAAGGTGAAttttttttCATCTTGAAGTGaaaaaaaTGGATTTTTCGTTCAGTA 3464 | | ||||||||| |||||||| || | || | |||||||| |||||||||| |||| Sbjct 78580 CCC--CAAAGGTGA--TTTTTTTCTTCCTAAAAT-AAAAAAATTGATTTTTCGTCAAGTA 78634 Query 3465 CGTCATAATTAATTTGGCT 3483 ||||| ||||||||||||| Sbjct 78635 CGTCACAATTAATTTGGCT 78653 Score = 77.0 bits (84), Expect = 7e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 3104 CATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATT 3163 |||||| || ||||||||||||||||| | ||| ||| ||| | |||||||| | || Sbjct 80067 CATATGGGGCATTCCAGCTGAACTCGACCCGGTTTGGACCTCATGGATTCGGATTCAGTT 80008 Query 3164 CTCAAtttttttCCGAAAT 3182 |||||||||||| |||||| Sbjct 80007 CTCAATTTTTTT-CGAAAT 79990 >seq1074 Length=14548 Score = 185 bits (204), Expect = 2e-43 Identities = 300/424 (71%), Gaps = 32/424 (8%) Strand=Plus/Minus Query 3081 ACACCATATGCGCTTT--CTGAATGCATATGAGGTATTCCAGCTGAACTCGAGCTACTTT 3138 ||||||| | | ||| || ||| |||| | ||||||||||||||||| | ||| Sbjct 9040 ACACCATCTTAGATTTTGCTCAATATTTATGGGAAATTCCAGCTGAACTCGACCCGGTTT 8981 Query 3139 CGACTTCACCGGTTCGGATTTAATTCTCAAtttttttCCGAAATCCTACTAGCCCGCTCA 3198 | | ||| | |||||||| | ||||||||||||||| ||||| ||| |||||| | | Sbjct 8980 GGCCCTCATGGATTCGGATTCAGTTCTCAATTTTTTTC-GAAATTCTATTAGCCCACAAA 8922 Query 3199 A-GA-----AAGTTTT--AGATTTTTTAANNNNNNNNNNNATCAAACGTTCACGAGCTGT 3250 | || || |||| ||||||| || ||||||| | |||| | | Sbjct 8921 AAGACCCTCAATTTTTTCAGATTTTCAAA-----------ATCAAACCATTTCGAGTTAT 8873 Query 3251 AACTTCCGTTTCAAATCGCCTTTTTAAAAATATGAGTCTTTCCATGGAGACGTAGCGAAA 3310 | || |||||||| ||||| | ||| |||| ||| || | |||||| | || Sbjct 8872 GATTTTTTGTTCAAATCACCTTTCTTCAAAAATGACATTTTTCAAGAGGACGTAATGCAA 8813 Query 3311 AAACCTGAAGGTTGACaaaaaaaTTTTCATCAAAATCAAGTGCACAGTTTGGTTCGAAAT 3370 |||| ||| | |||||| ||||||| ||| ||||| || | | || |||| || || | Sbjct 8812 AAACGTGAGGTCTGACAATAAAATTT-CATAAAAATAAAATACTCATTTTGACTCAAAGT 8754 Query 3371 TTGATTGAAAAAATGCTGAAAATAAGTGCAACAACACTTC--AAAGGTGAAttttttttC 3428 || | |||||||| |||||| | || |||| |||| |||||||| |||||||| Sbjct 8753 TTCGTAAAAAAAATGTTGAAAAAATGTACAAC----CTTCCCAAAGGTGA--TTTTTTTC 8700 Query 3429 ATCTTGAAGTGaaaaaaaTGGATTTTTCGTTCAGTACGTCATAATTAATTTGGCTGAAAA 3488 || | || | ||||||||| ||||||||| ||||||||| ||||||||||||| || Sbjct 8699 TTCCTAAAATAAAAAAAATG-ATTTTTCGTCAAGTACGTCACAATTAATTTGGCTCAATT 8641 Query 3489 TTTT 3492 |||| Sbjct 8640 TTTT 8637 Score = 163 bits (180), Expect = 6e-37 Identities = 272/387 (70%), Gaps = 26/387 (7%) Strand=Plus/Plus Query 3105 ATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATTC 3164 ||| | || ||||||||||||||||| ||| ||| ||| | |||||||| | ||| Sbjct 7200 ATAAGGGGCATTCCAGCTGAACTCGACTCGGTTTGGACCTCATGGATTCGGATTCAGTTC 7259 Query 3165 TCAAtttttttCCGAAATCCTACTAGCCCGCTCAA-GA-----AAGTTTT--AGATTTTT 3216 |||||||||||| |||| ||| || ||| | || || || |||| |||||||| Sbjct 7260 TCAATTTTTTTCA-AAATTCTATTAACCCACAAAAAGACCCTCAATTTTTTCAGATTTTT 7318 Query 3217 TAANNNNNNNNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTTA 3276 || ||||||| | ||| | | | || |||||||| ||||| | Sbjct 7319 AAA-----------ATCAAACCATTTTGAGTTATGATTTTTTGTTCAAATCACCTTTCTT 7367 Query 3277 AAAATATGAGTCTTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTTT 3336 ||| |||| ||| || | |||||| || |||||| ||| | |||||| |||||| Sbjct 7368 CAAAAATGACATTTTTCAAGAGGACGTAACGCAAAAACGTGAGGTCTGACAATCAAATTT 7427 Query 3337 TCATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATTGAAAAAATGCTGAAAATAAG 3396 | | ||||| || | | || | || | || ||| || |||||||| |||||| | Sbjct 7428 CC-TAAAAATAAAATACTCATTCTGACCCAAAGTTTCATGAAAAAAATGTTGAAAAAATC 7486 Query 3397 TGCAACAACACTTCAAAGGTGAAttttttttCATCTTGAAGTGaaaaaaaTGGATTTTTC 3456 | |||| | | ||||||||| |||||||| || | || | ||||||||| ||||||| Sbjct 7487 TACAACCTCCC--CAAAGGTGA--TTTTTTTCTTCCTAAAATAAAAAAAATG-ATTTTTC 7541 Query 3457 GTTCAGTACGTCATAATTAATTTGGCT 3483 || ||||||||| ||||||||||||| Sbjct 7542 GTCAAGTACGTCACAATTAATTTGGCT 7568 >seq1879 Length=273905 Score = 149 bits (164), Expect = 1e-32 Identities = 268/385 (70%), Gaps = 15/385 (4%) Strand=Plus/Minus Query 3102 TGCATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAA 3161 |||||||| || |||| |||||||||||| | ||||| ||| ||| ||||| ||| Sbjct 252820 TGCATATGGGGCATTCTAGCTGAACTCGACCCACTTTTGACCTCATGTGTTCGAATTCCG 252761 Query 3162 TTCTCAAtttttttCCGAAATCCTACTAGCCCGCTCAAGAAAGTTTTAGATTTTTTAANN 3221 ||||||||||||| ||||||| |||||||||| | ||||| | || ||||||| | Sbjct 252760 TTCTCAATTTTTT-CCGAAATTCTACTAGCCCAC--AAGAAGACTCTAAATTTTTTCAGA 252704 Query 3222 NNNNNNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTTAAAAAT 3281 || ||| | | |||| ||| | || | |||||||| || ||||| | Sbjct 252703 TTTTTTAA-ATTAAATGGTTGCGAGTTGTGATTTTC-TTTCAAATTGCGTTTTTTTTTTT 252646 Query 3282 ATGAGTC----TTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTTTT 3337 | | | ||| || | ||||||||| | |||| || ||| ||| |||||| Sbjct 252645 TTTAATTACATTTTTCAAGAGGACGTAGCGCAGAAACGCGACCTTTGGCAATTAAATTT- 252587 Query 3338 CATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATTGAAAAAATGCTGAAAATAAGT 3397 ||| |||| || | | | |||| || || ||| | ||||||| ||| | | | Sbjct 252586 CATAGAAATAAAATACTGAATTTGACTCAAAGTTTCGTAAAAAAAATTACGAAGAAATCT 252527 Query 3398 GCAACAACACTTCAAAGGTGAAttttttttCATCTTGAAGTGaaaaaaaTGGATTTTTCG 3457 |||| | | |||| |||| |||||||| || | |||| |||||||| |||||||| Sbjct 252526 ACAACCTCCC--CAAAAGTGA--TTTTTTTCTTCCTAAAGT-AAAAAAATTGATTTTTCC 252472 Query 3458 TTCAGTACGTCATAATTAATTTGGC 3482 | |||| ||||||||||||||||| Sbjct 252471 TCAAGTATGTCATAATTAATTTGGC 252447 >seq1668 Length=588872 Score = 105 bits (116), Expect = 1e-19 Identities = 202/295 (68%), Gaps = 22/295 (7%) Strand=Plus/Plus Query 3105 ATATGAGGTATTCCAGCTGAACTCGAGCTACTTTCGACTTCACCGGTTCGGATTTAATTC 3164 ||||| |||||||||||||||||||| | ||| ||| ||| | |||||||| | ||| Sbjct 295104 ATATGGGGTATTCCAGCTGAACTCGACCCGGTTTGGACCTCATGGATTCGGATTCAGTTC 295163 Query 3165 TCAAtttttttCCGAAATCCTACTAGCCCGC-TCAAGA-----AAGT---TTTAGATTTT 3215 ||||||||||| |||||| ||| || ||| | |||| || | || ||||||| Sbjct 295164 TCAATTTTTTT-CGAAATTCTATTAACCCACAAAAAGACGCTCAATTTTATTGAGATTTT 295222 Query 3216 TTAANNNNNNNNNNNATCAAACGTTCACGAGCTGTAACTTCCGTTTCAAATCGCCTTTTT 3275 | || ||||||| | | || | | | || |||||||| | | ||| Sbjct 295223 TAAA-----------ATCAAACCATTTCTAGTTATGATTTTTTGTTCAAATCACTTGTTT 295271 Query 3276 AAAAATATGAGTCTTTCCATGGAGACGTAGCGAAAAAACCTGAAGGTTGACaaaaaaaTT 3335 ||| |||| ||| || | |||||| || |||||| ||| | |||||| ||| | Sbjct 295272 TCAAAAATGACATTTTTCAAGAGGACGTAACGCAAAAACTTGAGGTCTGACAATGAAA-T 295330 Query 3336 TTCATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATTGAAAAAATGCTGAA 3390 ||||| ||||| || | | || || | | || ||| || |||||||| |||| Sbjct 295331 TTCATGAAAATAAAATACTCATTTCGACCCAAAGTTTCATAAAAAAAATGTTGAA 295385 >seq870 Length=16763 Score = 82.4 bits (90), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 15/245 (6%) Strand=Plus/Minus Query 3260 TTCAAATCGCCTTTTTAAAAATATGAGTCTTTCCATGGAGACGTAGCGAAAAAACCTGAA 3319 ||||||| ||| | | |||| |||| | | || || ||||| | | |||||| ||| Sbjct 10306 TTCAAATAACCTCTCTTAAAAAATGACATTCTTCAAGGGGACGTGGGGCAAAAACGTGAG 10247 Query 3320 GGTTGACaaaaaaaTTTTCATCAAAATCAAGTGCACAGTTTGGTTCGAAATTTGATT--- 3376 | |||||| |||||||| ||||| | || ||| | ||| |||||||||||| ||| Sbjct 10246 GTCTGACAATAAAATTTTGTTCAAA-TAAAATGCTCGGTTCGGTTCGAAATTTCATTATA 10188 Query 3377 ---GAAAAAATGCTGAAAATAAGTGCAACAACACTTCAAAGGTGAAttttttttCATC-- 3431 |||||||| | | | |||| || || | ||||||||| ||||| || | Sbjct 10187 AAAAAAAAAATG--GTAGAAAAGTCTAAAAATTCCGCAAAGGTGA--TTTTTCCCACCCA 10132 Query 3432 -TTGAAGTGaaaaaaaTGGATTTTTCGTTCAGTACGTCATAATTAATTTGGCTGAAAATT 3490 || |||||||| ||||||||| ||| | |||| ||| ||| ||| | ||| Sbjct 10131 AGGTAAAAGAAAAAAAATGATTTTTCG-TCAACGCATCATGATTGATTGGGCCCGATATT 10073 Query 3491 TTCTT 3495 || || Sbjct 10072 TTTTT 10068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11081051789785