Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008925.1 Length=3821 Score E Sequences producing significant alignments: (Bits) Value seq1274 150 4e-33 seq4055 145 2e-31 seq746 86.0 2e-13 >seq1274 Length=9570 Score = 150 bits (166), Expect = 4e-33 Identities = 118/136 (87%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 1842 GTCAGAATTATACTATTTATTCTTAGATCATATTTTAGTCGACGAAGGATGTCGCTGGTA 1901 |||||||| || ||||||||| || |||||||||||||| || ||| ||||| |||||| Sbjct 5579 GTCAGAATGATGTTATTTATTCGTA-ATCATATTTTAGTC-ACAAAGAATGTCACTGGTA 5636 Query 1902 TGTCAAAATTACGTAAAATTTT-ATCATCTAGCTGTGACTCACCAG-GATGTCAAACCTA 1959 |||||| ||||||||||||||| || | ||||| ||||| ||||| ||||||||| ||| Sbjct 5637 TGTCAACATTACGTAAAATTTTAATTACTTAGCTATGACTTACCAGTGATGTCAAATCTA 5696 Query 1960 GGTCATGTGTTCACTG 1975 |||||||||||||||| Sbjct 5697 GGTCATGTGTTCACTG 5712 >seq4055 Length=122046 Score = 145 bits (160), Expect = 2e-31 Identities = 118/138 (86%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 1842 GTCAGAATTATACTATTTATTCTTAGATCATATTTTAGTCGACGAAGGATGTCGCTGGTA 1901 |||||||| || |||||||| || |||||||||||||| || || ||||| |||||| Sbjct 434 GTCAGAATGATGTCATTTATTCGTA-ATCATATTTTAGTC-ACAAATAATGTCACTGGTA 377 Query 1902 TGTCAAAATTACGTAAAATTTTA-TCATCTAGCTGTGACTCACCAG-GATGTCAAACCTA 1959 |||||| |||||||||||||||| | | ||||| ||||| |||| ||||||||||||| Sbjct 376 TGTCAACATTACGTAAAATTTTAATTACTTAGCTATGACTTACCAATGATGTCAAACCTA 317 Query 1960 GGTCATGTGTTCACTGGG 1977 |||||||||||||||||| Sbjct 316 GGTCATGTGTTCACTGGG 299 >seq746 Length=331260 Score = 86.0 bits (94), Expect = 2e-13 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 1842 GTCAGAATTATACTATTTATTCTTAGATCATATTTTAGTCGACGAAGGATGTCGCTGGTA 1901 |||||||| ||| | || | || ||||||| |||||| | ||||||||| || || Sbjct 326332 GTCAGAATGATATCTTATAATTTTGCATCATATCTTAGTC-AGAAAGGATGTCACTATTA 326390 Query 1902 TGTCAAAATTACGTAAAATTTTATCATCTAGCTGTGACTCACCAG-GATGTCAAACCTAG 1960 ||||||| |||||| |||||| | | ||| ||||||| || | ||||| || | || Sbjct 326391 TGTCAAATTTACGTCAAATTTCGTTACCTACCTGTGACCTACTAATGATGTAGAATCAAG 326450 Query 1961 GTCATGTGTTC 1971 ||||||||||| Sbjct 326451 GTCATGTGTTC 326461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12114600657270