Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008948.1 Length=4442 Score E Sequences producing significant alignments: (Bits) Value seq3 637 1e-179 >seq3 Length=395261 Score = 637 bits (706), Expect = 1e-179 Identities = 949/1334 (71%), Gaps = 49/1334 (4%) Strand=Plus/Minus Query 2991 ACAGTGATTCTTCGAGTGAATCTGTATTGCCGCGGTTGATTTTGAAGAAAATTGGAAAGA 3050 ||||||| | ||||||||||| |||||||| |||||||||||||| ||| ||| || Sbjct 60725 ACAGTGAGTTTTCGAGTGAATAGTCATTGCCGCAGTTGATTTTGAAGAGAATGAGAACGA 60666 Query 3051 ACGAACCGGCAGAGTCCGAAATTGATCCGGTTCTGAGAGACTTTCAGAGTGATTCTAAAG 3110 | |||| | || | ||| ||||| |||||||| ||| | ||||||| ||||| Sbjct 60665 ATGAACTGATGGAAACAAAAACTGATCAGGTTCTGAAAGAGATGAAGAGTGAGGTTAAAG 60606 Query 3111 TACAGTCAATGGATA---TTGATACTGCTTCTCAAGAAAGGAGCGAGGCAGTAGTGCCCT 3167 | | | | |||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct 60605 ACGACT-ATTTGATAGTGTTGATAGTGCTTCTCAAGAACGGAGCATATTAGTAGTGCCCT 60547 Query 3168 TCAAGAAGCGGCGTTTTAAAGGACTACTCGTGGATGAACATTCTGTAAGAAACATCTCCA 3227 ||||||||||| || | || ||| | ||||||| |||||| | || ||||| | Sbjct 60546 TCAAGAAGCGGTGTCACGTTGAACCACTTGCGGATGAAAATTCTGAACCAACCATCTGTA 60487 Query 3228 CAGAAGAAGAGACACAAGTTTTGAAGCAGAGCATCGCTGTTGAAGAAGCGCACAAGTCCG 3287 || |||||| |||||||| |||||||||| | ||| | | ||| ||||||| | Sbjct 60486 CAATGGAAGAGGAACAAGTTTCGAAGCAGAGCGTAGCTATCAAGAAAGGGCACAAGCGCA 60427 Query 3288 AAGCCATGTCTTGCGATGAGTCAGGCATTGAGAAGGAACGCCAAGATAAGAAAGAACAGC 3347 |||||||||||| | || || ||| | | ||| |||||| |||||||||| |||||| Sbjct 60426 AAGCCATGTCTTCCAATAAGCCAGACGACAAAAAGAAACGCCGAGATAAGAAAAAACAGC 60367 Query 3348 AGCA------------GCCAAAGGCAGAGTTGCCACAACCCACCAACGAACCATCGTCGA 3395 |||| |||||| ||||||||||| |||| ||||| |||||||| || | Sbjct 60366 AGCACAAGCAGCAGCAGCCAAAAGCAGAGTTGCCGCAACTAACCAAGGAACCATCATCAA 60307 Query 3396 GCCAGATGATGCATGCACCATACCGAGATGGAGCTCTCGCTGGAACATCTG---GT---- 3448 | | || || ||||| |||| | ||||| |||| ||||||||||||| || Sbjct 60306 GTCGGAAGACGCATGGTCCATGCGAAGATGCAGCTTGTGCTGGAACATCTGCCTGTGACG 60247 Query 3449 --ACAGGCTTTGTTTCATCCACCCAACTCACGTCCCACCCCCAAGAATTCTGGATCAACG 3506 |||| | ||| || || ||| ||| | |||| || | |||| |||| || | | Sbjct 60246 ACACAGAATCTGTGTCGTCAACCAAACAAAGCTCCCTCCTC---GAATGCTGGCTCGAAG 60190 Query 3507 TATTGaaaaaaaaCTTCAACGAGTTAGACTCCGCCAAGAGGCTTCAAGCTACCCAGTTTA 3566 ||| | ||| | || ||| ||| || | | |||| || |||| | || |||||| Sbjct 60189 AATTCACAAAGAGCTCCAATAAGTACGAGTGCAGCAAGGTACTGCAAGGTCCCGAGTTTA 60130 Query 3567 CAGAAGAACAAAATGAGATACTG-GACGGAGCATTCGTTGAATTGTCTCGGAGCATGGGT 3625 || ||||||||| ||| |||||| ||| | ||||| |||||||||||| ||| | Sbjct 60129 CAAAAGAACAAAGTGACATACTGCGACAGT-CATTCACCCAATTGTCTCGGAAGATGTCT 60071 Query 3626 CAAATCGTTTTAAACAGCACTCGTTCCCTGAAAACGCACAAGTGCAAACTCTGCGAATTC 3685 || ||||||| ||||| | ||||||||||||||||||||| |||| | ||| Sbjct 60070 TGCATTAAAACAAACAGCTGTCGTTTCATGAAAACGCACAAGTGCAAACGCTGCCAGTTC 60011 Query 3686 TCGATAGGACATCAATGCATGCCCCTGGATTTCTTCCGATATGTTCGGTTCGGCGCTGAG 3745 | | | |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct 60010 TGTACATCACATCAATGCATGCCCCTTGATTTCTTCCGATCTGTTCCGTTCGGCGCTGAG 59951 Query 3746 TTTATGGATGAAGCGTACTTTGCGCCAAGTGAGATAGTCGTATGCAACTGTGGCTTCGCT 3805 || |||||| |||| ||| | | |||| || ||| ||| || ||| ||||||| || | Sbjct 59950 TTCATGGATCAAGCATACATGGTGCCAGGTCAGACAGTTGTGTGCGACTGTGGTTTTTCC 59891 Query 3806 TTCTGTCACACACATATTAAAAGATTGCGAGCCTCGGTGGTGCGAGGCATTCCG-GGA-A 3863 |||| |||| ||||| |||||||| |||| | |||| || | | || || ||| | Sbjct 59890 TTCTCTCACGCACATCTTAAAAGAACGCGACACGTAGTGGAGCTAAG--TTACGTGGAGA 59833 Query 3864 GGCTTACGTATTGCTTACGAGAATACAACCGTTCTGTCGACGTCAGTTGCGCCAAATGCT 3923 || ||| | ||| | | |||||||||||||||||||||||||||||||||||| | Sbjct 59832 AGCACACGCCTCACTTGCAACTATACAACCGTTCTGTCGACGTCAGTTGCGCCAAATGTT 59773 Query 3924 TTTCCACCGTTGTTATGACCAATCGATCAAAAGAAATTTGTTGCGATGTGAATACCTGGG 3983 | || | ||||||| |||| | | || || | || || ||| || ||||||| Sbjct 59772 ATCTCAAAATCGTTATGAACAATTCAGCTAACGACGTCTGCTGTGATCTGGCCACCTGGG 59713 Query 3984 ACGGTATCACC---AATGCTCATCGTCAAACGTTTTACGATCATGTAAAAAGT--AATCC 4038 || |||| || ||||| |||| || |||| |||| | ||| || || ||| Sbjct 59712 ACTCTATCGCCGGTAATGC---TCGTGAATCGTTCTACGCTGCTGTTCAAGGTTGTTTCC 59656 Query 4039 AATCTGTAGACTGACTGACCG-ACCATCCTTGGATAACTTTTATGCTTGCAGTAAGGGTT 4097 | | | || || |||| |||||| |||||| | ||| ||||||||||||||||| Sbjct 59655 ACTATTCAG---GAACAACCGCACCATCATTGGATGAGTTTATTGCTTGCAGTAAGGGTT 59599 Query 4098 GCTGCCTCACGTATCATCATTGCTTCGGAACGGACGAGGTTCCCGGAGCTTTGACCACAT 4157 |||| |||| | ||||| ||||| |||| | |||| |||||| || | | ||| Sbjct 59598 GCTGTCTCATATTTCATCGTTGCTCTGGAAAGATTGAGGCTCCCGGCGCCAGCAGCTCAT 59539 Query 4158 CACCCGGTTGAATACTTCCACCGACACCATCCCATGGAGACCTGTCGTTCCAATGCACGA 4217 || |||||||| || | || | ||||||||||| || ||||||| || | | Sbjct 59538 CATCCGGTTGACTATGTTCATCAGCACCATCCCATTGACTTTCGTCGTTCTGGTGAATAA 59479 Query 4218 CTTGAGATTACACAATTATCCAATATATTCCTTAGATTCGAGTACGGGTGCAACTGGAGG 4277 | | ||| || ||||||| | || || | |||| || | || |||||||| Sbjct 59478 ---GTGCAAACAATATCATCCAATCCACCACTGAGCTGAGAGTTCGAGCGCTACTGGAGG 59422 Query 4278 CGCTGAAACCGACT 4291 |||||| ||||||| Sbjct 59421 CGCTGAGACCGACT 59408 Score = 113 bits (124), Expect = 1e-21 Identities = 129/172 (75%), Gaps = 15/172 (9%) Strand=Plus/Minus Query 1821 GATTATAAACCGTTTAACCAGAGCTCGCCGAGCAGTCCACTAGTTCCAGAAACCGCGAAA 1880 ||||| |||||||| ||||||||||| ||| |||||||||||| |||||| | ||| Sbjct 62240 GATTAAAAACCGTTCAACCAGAGCTCACCGTATCGTCCACTAGTTCGAGAAACTACAAAA 62181 Query 1881 GATGAAGGAACTTTGAAGCTTTACATCTGGAAC-------ATCAACA--CGATTAG---- 1927 ||| || ||| || ||||| |||||||||| ||| ||| || | || Sbjct 62180 GATAAAAGAATGTTTTCGCTTTGCATCTGGAACGTGACAAATCCACATCCGTTGAGAAAC 62121 Query 1928 -CACATCTGTTGAGAAATCTACTCGAACGTTCCTCAAAC-AAGAACCTCACA 1977 |||||| ||||| ||||||||| ||||||||| ||||| |||||| |||| Sbjct 62120 CCACATCGGTTGATAAATCTACTGGAACGTTCCGCAAACGTAGAACCACACA 62069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14101702349865