Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008948.1
Length=4442
Score E
Sequences producing significant alignments: (Bits) Value
seq3 637 1e-179
>seq3
Length=395261
Score = 637 bits (706), Expect = 1e-179
Identities = 949/1334 (71%), Gaps = 49/1334 (4%)
Strand=Plus/Minus
Query 2991 ACAGTGATTCTTCGAGTGAATCTGTATTGCCGCGGTTGATTTTGAAGAAAATTGGAAAGA 3050
||||||| | ||||||||||| |||||||| |||||||||||||| ||| ||| ||
Sbjct 60725 ACAGTGAGTTTTCGAGTGAATAGTCATTGCCGCAGTTGATTTTGAAGAGAATGAGAACGA 60666
Query 3051 ACGAACCGGCAGAGTCCGAAATTGATCCGGTTCTGAGAGACTTTCAGAGTGATTCTAAAG 3110
| |||| | || | ||| ||||| |||||||| ||| | ||||||| |||||
Sbjct 60665 ATGAACTGATGGAAACAAAAACTGATCAGGTTCTGAAAGAGATGAAGAGTGAGGTTAAAG 60606
Query 3111 TACAGTCAATGGATA---TTGATACTGCTTCTCAAGAAAGGAGCGAGGCAGTAGTGCCCT 3167
| | | | |||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct 60605 ACGACT-ATTTGATAGTGTTGATAGTGCTTCTCAAGAACGGAGCATATTAGTAGTGCCCT 60547
Query 3168 TCAAGAAGCGGCGTTTTAAAGGACTACTCGTGGATGAACATTCTGTAAGAAACATCTCCA 3227
||||||||||| || | || ||| | ||||||| |||||| | || ||||| |
Sbjct 60546 TCAAGAAGCGGTGTCACGTTGAACCACTTGCGGATGAAAATTCTGAACCAACCATCTGTA 60487
Query 3228 CAGAAGAAGAGACACAAGTTTTGAAGCAGAGCATCGCTGTTGAAGAAGCGCACAAGTCCG 3287
|| |||||| |||||||| |||||||||| | ||| | | ||| ||||||| |
Sbjct 60486 CAATGGAAGAGGAACAAGTTTCGAAGCAGAGCGTAGCTATCAAGAAAGGGCACAAGCGCA 60427
Query 3288 AAGCCATGTCTTGCGATGAGTCAGGCATTGAGAAGGAACGCCAAGATAAGAAAGAACAGC 3347
|||||||||||| | || || ||| | | ||| |||||| |||||||||| ||||||
Sbjct 60426 AAGCCATGTCTTCCAATAAGCCAGACGACAAAAAGAAACGCCGAGATAAGAAAAAACAGC 60367
Query 3348 AGCA------------GCCAAAGGCAGAGTTGCCACAACCCACCAACGAACCATCGTCGA 3395
|||| |||||| ||||||||||| |||| ||||| |||||||| || |
Sbjct 60366 AGCACAAGCAGCAGCAGCCAAAAGCAGAGTTGCCGCAACTAACCAAGGAACCATCATCAA 60307
Query 3396 GCCAGATGATGCATGCACCATACCGAGATGGAGCTCTCGCTGGAACATCTG---GT---- 3448
| | || || ||||| |||| | ||||| |||| ||||||||||||| ||
Sbjct 60306 GTCGGAAGACGCATGGTCCATGCGAAGATGCAGCTTGTGCTGGAACATCTGCCTGTGACG 60247
Query 3449 --ACAGGCTTTGTTTCATCCACCCAACTCACGTCCCACCCCCAAGAATTCTGGATCAACG 3506
|||| | ||| || || ||| ||| | |||| || | |||| |||| || | |
Sbjct 60246 ACACAGAATCTGTGTCGTCAACCAAACAAAGCTCCCTCCTC---GAATGCTGGCTCGAAG 60190
Query 3507 TATTGaaaaaaaaCTTCAACGAGTTAGACTCCGCCAAGAGGCTTCAAGCTACCCAGTTTA 3566
||| | ||| | || ||| ||| || | | |||| || |||| | || ||||||
Sbjct 60189 AATTCACAAAGAGCTCCAATAAGTACGAGTGCAGCAAGGTACTGCAAGGTCCCGAGTTTA 60130
Query 3567 CAGAAGAACAAAATGAGATACTG-GACGGAGCATTCGTTGAATTGTCTCGGAGCATGGGT 3625
|| ||||||||| ||| |||||| ||| | ||||| |||||||||||| ||| |
Sbjct 60129 CAAAAGAACAAAGTGACATACTGCGACAGT-CATTCACCCAATTGTCTCGGAAGATGTCT 60071
Query 3626 CAAATCGTTTTAAACAGCACTCGTTCCCTGAAAACGCACAAGTGCAAACTCTGCGAATTC 3685
|| ||||||| ||||| | ||||||||||||||||||||| |||| | |||
Sbjct 60070 TGCATTAAAACAAACAGCTGTCGTTTCATGAAAACGCACAAGTGCAAACGCTGCCAGTTC 60011
Query 3686 TCGATAGGACATCAATGCATGCCCCTGGATTTCTTCCGATATGTTCGGTTCGGCGCTGAG 3745
| | | |||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 60010 TGTACATCACATCAATGCATGCCCCTTGATTTCTTCCGATCTGTTCCGTTCGGCGCTGAG 59951
Query 3746 TTTATGGATGAAGCGTACTTTGCGCCAAGTGAGATAGTCGTATGCAACTGTGGCTTCGCT 3805
|| |||||| |||| ||| | | |||| || ||| ||| || ||| ||||||| || |
Sbjct 59950 TTCATGGATCAAGCATACATGGTGCCAGGTCAGACAGTTGTGTGCGACTGTGGTTTTTCC 59891
Query 3806 TTCTGTCACACACATATTAAAAGATTGCGAGCCTCGGTGGTGCGAGGCATTCCG-GGA-A 3863
|||| |||| ||||| |||||||| |||| | |||| || | | || || ||| |
Sbjct 59890 TTCTCTCACGCACATCTTAAAAGAACGCGACACGTAGTGGAGCTAAG--TTACGTGGAGA 59833
Query 3864 GGCTTACGTATTGCTTACGAGAATACAACCGTTCTGTCGACGTCAGTTGCGCCAAATGCT 3923
|| ||| | ||| | | |||||||||||||||||||||||||||||||||||| |
Sbjct 59832 AGCACACGCCTCACTTGCAACTATACAACCGTTCTGTCGACGTCAGTTGCGCCAAATGTT 59773
Query 3924 TTTCCACCGTTGTTATGACCAATCGATCAAAAGAAATTTGTTGCGATGTGAATACCTGGG 3983
| || | ||||||| |||| | | || || | || || ||| || |||||||
Sbjct 59772 ATCTCAAAATCGTTATGAACAATTCAGCTAACGACGTCTGCTGTGATCTGGCCACCTGGG 59713
Query 3984 ACGGTATCACC---AATGCTCATCGTCAAACGTTTTACGATCATGTAAAAAGT--AATCC 4038
|| |||| || ||||| |||| || |||| |||| | ||| || || |||
Sbjct 59712 ACTCTATCGCCGGTAATGC---TCGTGAATCGTTCTACGCTGCTGTTCAAGGTTGTTTCC 59656
Query 4039 AATCTGTAGACTGACTGACCG-ACCATCCTTGGATAACTTTTATGCTTGCAGTAAGGGTT 4097
| | | || || |||| |||||| |||||| | ||| |||||||||||||||||
Sbjct 59655 ACTATTCAG---GAACAACCGCACCATCATTGGATGAGTTTATTGCTTGCAGTAAGGGTT 59599
Query 4098 GCTGCCTCACGTATCATCATTGCTTCGGAACGGACGAGGTTCCCGGAGCTTTGACCACAT 4157
|||| |||| | ||||| ||||| |||| | |||| |||||| || | | |||
Sbjct 59598 GCTGTCTCATATTTCATCGTTGCTCTGGAAAGATTGAGGCTCCCGGCGCCAGCAGCTCAT 59539
Query 4158 CACCCGGTTGAATACTTCCACCGACACCATCCCATGGAGACCTGTCGTTCCAATGCACGA 4217
|| |||||||| || | || | ||||||||||| || ||||||| || | |
Sbjct 59538 CATCCGGTTGACTATGTTCATCAGCACCATCCCATTGACTTTCGTCGTTCTGGTGAATAA 59479
Query 4218 CTTGAGATTACACAATTATCCAATATATTCCTTAGATTCGAGTACGGGTGCAACTGGAGG 4277
| | ||| || ||||||| | || || | |||| || | || ||||||||
Sbjct 59478 ---GTGCAAACAATATCATCCAATCCACCACTGAGCTGAGAGTTCGAGCGCTACTGGAGG 59422
Query 4278 CGCTGAAACCGACT 4291
|||||| |||||||
Sbjct 59421 CGCTGAGACCGACT 59408
Score = 113 bits (124), Expect = 1e-21
Identities = 129/172 (75%), Gaps = 15/172 (9%)
Strand=Plus/Minus
Query 1821 GATTATAAACCGTTTAACCAGAGCTCGCCGAGCAGTCCACTAGTTCCAGAAACCGCGAAA 1880
||||| |||||||| ||||||||||| ||| |||||||||||| |||||| | |||
Sbjct 62240 GATTAAAAACCGTTCAACCAGAGCTCACCGTATCGTCCACTAGTTCGAGAAACTACAAAA 62181
Query 1881 GATGAAGGAACTTTGAAGCTTTACATCTGGAAC-------ATCAACA--CGATTAG---- 1927
||| || ||| || ||||| |||||||||| ||| ||| || | ||
Sbjct 62180 GATAAAAGAATGTTTTCGCTTTGCATCTGGAACGTGACAAATCCACATCCGTTGAGAAAC 62121
Query 1928 -CACATCTGTTGAGAAATCTACTCGAACGTTCCTCAAAC-AAGAACCTCACA 1977
|||||| ||||| ||||||||| ||||||||| ||||| |||||| ||||
Sbjct 62120 CCACATCGGTTGATAAATCTACTGGAACGTTCCGCAAACGTAGAACCACACA 62069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14101702349865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |