Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008950.1
Length=5254
Score E
Sequences producing significant alignments: (Bits) Value
seq4360 114 4e-22
seq4069 114 4e-22
seq737 114 4e-22
seq304 111 5e-21
seq4102 104 8e-19
seq1724 102 3e-18
seq95 102 3e-18
seq149 96.9 1e-16
seq180 95.1 4e-16
seq4237 93.3 1e-15
seq2351 87.8 6e-14
>seq4360
Length=75335
Score = 114 bits (126), Expect = 4e-22
Identities = 107/135 (79%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126
||||||||||| || |||| |||| ||||| || || |||| |||||| || ||||||
Sbjct 2254 GAGAGAGTTCTCGCCCGATA--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 2311
Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCT 4186
|||||||| || || |||||||| ||||| | | | |||| |||| ||||| || |
Sbjct 2312 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGTTCTGACGACGGGCGAACCTGGTCGTTGT 2371
Query 4187 CGAGAGGTCGCCACA 4201
|||||||||||||||
Sbjct 2372 CGAGAGGTCGCCACA 2386
>seq4069
Length=477175
Score = 114 bits (126), Expect = 4e-22
Identities = 107/135 (79%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126
||||||||||| || |||| |||| ||||| || || |||| |||||| || ||||||
Sbjct 475203 GAGAGAGTTCTCGCACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 475146
Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCT 4186
|||||||| || || |||||||| ||||| || | | |||| |||| ||||| || |
Sbjct 475145 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAACCTGGTCGTTGT 475086
Query 4187 CGAGAGGTCGCCACA 4201
||||||||| |||||
Sbjct 475085 CGAGAGGTCACCACA 475071
>seq737
Length=17440
Score = 114 bits (126), Expect = 4e-22
Identities = 107/135 (79%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126
||||||||||| || |||| |||| ||||| || || |||| |||||| || ||||||
Sbjct 1170 GAGAGAGTTCTCGCCCGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 1113
Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCT 4186
|||||||| | || |||||||| ||||| || | | |||| |||| ||||| || |
Sbjct 1112 TGCCGCTTATGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAACCTGGTCGTTGT 1053
Query 4187 CGAGAGGTCGCCACA 4201
|||||||||||||||
Sbjct 1052 CGAGAGGTCGCCACA 1038
>seq304
Length=38953
Score = 111 bits (122), Expect = 5e-21
Identities = 103/130 (79%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131
|||||| || ||||| |||| ||||| || ||||||| |||||| || |||||||||||
Sbjct 1835 AGTTCTCGCACGATT--ATTCGTCGCAGAGACGAAACGTCAGCGTCTGCTTACGCTGCCG 1892
Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191
||| || || |||||||| ||||| | | | |||| |||| ||||| || ||||||
Sbjct 1893 CTTTCGATCTGGGGCGCTGCTCTCGGTTCTGACGACGGGCGAACCTGGTCGTTGTCGAGA 1952
Query 4192 GGTCGCCACA 4201
||||||| ||
Sbjct 1953 GGTCGCCGCA 1962
>seq4102
Length=104656
Score = 104 bits (114), Expect = 8e-19
Identities = 102/131 (78%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 4071 GAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCC 4130
||||||| | |||| |||| ||||| || || |||| |||||| || ||||||||||
Sbjct 59608 GAGTTCTCGAACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGCTGCC 59665
Query 4131 GCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAG 4190
|||| || || |||||||| ||||| || | | |||| |||| ||||| || || ||
Sbjct 59666 GCTTACGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAACCTGGTCGTTGTCCAG 59725
Query 4191 AGGTCGCCACA 4201
|||||||||||
Sbjct 59726 AGGTCGCCACA 59736
>seq1724
Length=271759
Score = 102 bits (112), Expect = 3e-18
Identities = 101/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131
|||||| || |||| |||| |||| || || |||| |||||| || || ||||||||
Sbjct 246799 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTGCGCTGCCG 246742
Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191
||| || | |||||||| ||||| | | | |||| |||| ||||||||| ||||||
Sbjct 246741 CTTACGAGCTGGGGCGCTGCTCTCGGTTCTGACGACGGGCGAAGCTGGTTGTTGTCGAGA 246682
Query 4192 GGTCGCCACA 4201
||||||||||
Sbjct 246681 GGTCGCCACA 246672
Score = 84.2 bits (92), Expect = 7e-13
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 4103 CGAAACGACAGCGTTTGTTTACGCTGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCG 4162
|| |||| |||||| || || ||||||||||| || | |||||||| ||||| | | |
Sbjct 246455 CGGAACGTCAGCGTCTGCTTGCGCTGCCGCTTACGAGCTGGGGCGCTGCTCTCGGTTCTG 246396
Query 4163 TCGACCAGCGATGCTGGTTGTGCTCGAGAGGTCGCCACA 4201
|||| |||| |||||||| ||||||||||||||||
Sbjct 246395 ACGACGGGCGAACCTGGTTGTTGTCGAGAGGTCGCCACA 246357
>seq95
Length=49974
Score = 102 bits (112), Expect = 3e-18
Identities = 101/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131
|||||| || |||| |||| |||| || || |||| |||||| || |||||||||||
Sbjct 42068 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTACGCTGCCG 42125
Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191
||| || || |||||||| ||||| | | | |||| |||| |||||| || ||||||
Sbjct 42126 CTTACGATCTGGGGCGCTGCTCTCGGTTCTGACGACGGGCGAAGCTGGTCGTTGTCGAGA 42185
Query 4192 GGTCGCCACA 4201
|||| |||||
Sbjct 42186 GGTCACCACA 42195
>seq149
Length=38132
Score = 96.9 bits (106), Expect = 1e-16
Identities = 100/130 (77%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131
|||||| || |||| |||| |||| || || |||| |||||| || || ||||||||
Sbjct 20290 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTGCGCTGCCG 20233
Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191
||| || | |||||||| |||| | | | |||| |||| ||||||||| ||||||
Sbjct 20232 CTTACGAACTGGGGCGCTGTTCTCGGTTCTGACGACGGGCGAAGCTGGTTGTTGTCGAGA 20173
Query 4192 GGTCGCCACA 4201
||||||||||
Sbjct 20172 GGTCGCCACA 20163
>seq180
Length=369869
Score = 95.1 bits (104), Expect = 4e-16
Identities = 107/144 (74%), Gaps = 11/144 (8%)
Strand=Plus/Minus
Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126
||||| ||||| | |||| |||| ||||| || || |||| |||||| || ||||||
Sbjct 120127 GAGAGGGTTCTCGAACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 120070
Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCG---------ACCAGCGATGCT 4177
|||||||| || || |||||||| ||||| || | | || ||| |||| ||
Sbjct 120069 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAAACCCGCGAAACT 120010
Query 4178 GGTTGTGCTCGAGAGGTCGCCACA 4201
||| || ||||||||||||||||
Sbjct 120009 GGTCGTTGTCGAGAGGTCGCCACA 119986
>seq4237
Length=93076
Score = 93.3 bits (102), Expect = 1e-15
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131
|||||| || |||| |||| |||| || || |||| |||||| || || |||||||
Sbjct 69888 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTGCGCTGCCA 69945
Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191
||| || | |||||||| ||||| | | | |||| ||| ||||||||| ||||||
Sbjct 69946 CTTACGAGCTGGGGCGCTGCTCTCGGTTCTGGCGACGGGCGGAGCTGGTTGTTGTCGAGA 70005
Query 4192 GGTCGCCACA 4201
||||||||||
Sbjct 70006 GGTCGCCACA 70015
>seq2351
Length=3515
Score = 87.8 bits (96), Expect = 6e-14
Identities = 75/92 (82%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126
||||||||||| || |||| |||| ||||| || || |||| |||||| || ||||||
Sbjct 3419 GAGAGAGTTCTCGCACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 3476
Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGC 4158
|||||||| || || |||||||| ||||| ||
Sbjct 3477 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGC 3508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16699973806205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |