Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008950.1 Length=5254 Score E Sequences producing significant alignments: (Bits) Value seq4360 114 4e-22 seq4069 114 4e-22 seq737 114 4e-22 seq304 111 5e-21 seq4102 104 8e-19 seq1724 102 3e-18 seq95 102 3e-18 seq149 96.9 1e-16 seq180 95.1 4e-16 seq4237 93.3 1e-15 seq2351 87.8 6e-14 >seq4360 Length=75335 Score = 114 bits (126), Expect = 4e-22 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126 ||||||||||| || |||| |||| ||||| || || |||| |||||| || |||||| Sbjct 2254 GAGAGAGTTCTCGCCCGATA--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 2311 Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCT 4186 |||||||| || || |||||||| ||||| | | | |||| |||| ||||| || | Sbjct 2312 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGTTCTGACGACGGGCGAACCTGGTCGTTGT 2371 Query 4187 CGAGAGGTCGCCACA 4201 ||||||||||||||| Sbjct 2372 CGAGAGGTCGCCACA 2386 >seq4069 Length=477175 Score = 114 bits (126), Expect = 4e-22 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126 ||||||||||| || |||| |||| ||||| || || |||| |||||| || |||||| Sbjct 475203 GAGAGAGTTCTCGCACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 475146 Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCT 4186 |||||||| || || |||||||| ||||| || | | |||| |||| ||||| || | Sbjct 475145 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAACCTGGTCGTTGT 475086 Query 4187 CGAGAGGTCGCCACA 4201 ||||||||| ||||| Sbjct 475085 CGAGAGGTCACCACA 475071 >seq737 Length=17440 Score = 114 bits (126), Expect = 4e-22 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126 ||||||||||| || |||| |||| ||||| || || |||| |||||| || |||||| Sbjct 1170 GAGAGAGTTCTCGCCCGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 1113 Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCT 4186 |||||||| | || |||||||| ||||| || | | |||| |||| ||||| || | Sbjct 1112 TGCCGCTTATGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAACCTGGTCGTTGT 1053 Query 4187 CGAGAGGTCGCCACA 4201 ||||||||||||||| Sbjct 1052 CGAGAGGTCGCCACA 1038 >seq304 Length=38953 Score = 111 bits (122), Expect = 5e-21 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131 |||||| || ||||| |||| ||||| || ||||||| |||||| || ||||||||||| Sbjct 1835 AGTTCTCGCACGATT--ATTCGTCGCAGAGACGAAACGTCAGCGTCTGCTTACGCTGCCG 1892 Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191 ||| || || |||||||| ||||| | | | |||| |||| ||||| || |||||| Sbjct 1893 CTTTCGATCTGGGGCGCTGCTCTCGGTTCTGACGACGGGCGAACCTGGTCGTTGTCGAGA 1952 Query 4192 GGTCGCCACA 4201 ||||||| || Sbjct 1953 GGTCGCCGCA 1962 >seq4102 Length=104656 Score = 104 bits (114), Expect = 8e-19 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 4071 GAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCC 4130 ||||||| | |||| |||| ||||| || || |||| |||||| || |||||||||| Sbjct 59608 GAGTTCTCGAACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGCTGCC 59665 Query 4131 GCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAG 4190 |||| || || |||||||| ||||| || | | |||| |||| ||||| || || || Sbjct 59666 GCTTACGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAACCTGGTCGTTGTCCAG 59725 Query 4191 AGGTCGCCACA 4201 ||||||||||| Sbjct 59726 AGGTCGCCACA 59736 >seq1724 Length=271759 Score = 102 bits (112), Expect = 3e-18 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131 |||||| || |||| |||| |||| || || |||| |||||| || || |||||||| Sbjct 246799 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTGCGCTGCCG 246742 Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191 ||| || | |||||||| ||||| | | | |||| |||| ||||||||| |||||| Sbjct 246741 CTTACGAGCTGGGGCGCTGCTCTCGGTTCTGACGACGGGCGAAGCTGGTTGTTGTCGAGA 246682 Query 4192 GGTCGCCACA 4201 |||||||||| Sbjct 246681 GGTCGCCACA 246672 Score = 84.2 bits (92), Expect = 7e-13 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4103 CGAAACGACAGCGTTTGTTTACGCTGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCG 4162 || |||| |||||| || || ||||||||||| || | |||||||| ||||| | | | Sbjct 246455 CGGAACGTCAGCGTCTGCTTGCGCTGCCGCTTACGAGCTGGGGCGCTGCTCTCGGTTCTG 246396 Query 4163 TCGACCAGCGATGCTGGTTGTGCTCGAGAGGTCGCCACA 4201 |||| |||| |||||||| |||||||||||||||| Sbjct 246395 ACGACGGGCGAACCTGGTTGTTGTCGAGAGGTCGCCACA 246357 >seq95 Length=49974 Score = 102 bits (112), Expect = 3e-18 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131 |||||| || |||| |||| |||| || || |||| |||||| || ||||||||||| Sbjct 42068 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTACGCTGCCG 42125 Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191 ||| || || |||||||| ||||| | | | |||| |||| |||||| || |||||| Sbjct 42126 CTTACGATCTGGGGCGCTGCTCTCGGTTCTGACGACGGGCGAAGCTGGTCGTTGTCGAGA 42185 Query 4192 GGTCGCCACA 4201 |||| ||||| Sbjct 42186 GGTCACCACA 42195 >seq149 Length=38132 Score = 96.9 bits (106), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131 |||||| || |||| |||| |||| || || |||| |||||| || || |||||||| Sbjct 20290 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTGCGCTGCCG 20233 Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191 ||| || | |||||||| |||| | | | |||| |||| ||||||||| |||||| Sbjct 20232 CTTACGAACTGGGGCGCTGTTCTCGGTTCTGACGACGGGCGAAGCTGGTTGTTGTCGAGA 20173 Query 4192 GGTCGCCACA 4201 |||||||||| Sbjct 20172 GGTCGCCACA 20163 >seq180 Length=369869 Score = 95.1 bits (104), Expect = 4e-16 Identities = 107/144 (74%), Gaps = 11/144 (8%) Strand=Plus/Minus Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126 ||||| ||||| | |||| |||| ||||| || || |||| |||||| || |||||| Sbjct 120127 GAGAGGGTTCTCGAACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 120070 Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCG---------ACCAGCGATGCT 4177 |||||||| || || |||||||| ||||| || | | || ||| |||| || Sbjct 120069 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGCTCTGACGACGGGCGAAACCCGCGAAACT 120010 Query 4178 GGTTGTGCTCGAGAGGTCGCCACA 4201 ||| || |||||||||||||||| Sbjct 120009 GGTCGTTGTCGAGAGGTCGCCACA 119986 >seq4237 Length=93076 Score = 93.3 bits (102), Expect = 1e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 4072 AGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGCTGCCG 4131 |||||| || |||| |||| |||| || || |||| |||||| || || ||||||| Sbjct 69888 AGTTCTCGCACGATC--ATTCGTCGCCGAGACGGAACGTCAGCGTCTGCTTGCGCTGCCA 69945 Query 4132 CTTGCGTTCCGGGGCGCTCCTCTCCGCGCCGTCGACCAGCGATGCTGGTTGTGCTCGAGA 4191 ||| || | |||||||| ||||| | | | |||| ||| ||||||||| |||||| Sbjct 69946 CTTACGAGCTGGGGCGCTGCTCTCGGTTCTGGCGACGGGCGGAGCTGGTTGTTGTCGAGA 70005 Query 4192 GGTCGCCACA 4201 |||||||||| Sbjct 70006 GGTCGCCACA 70015 >seq2351 Length=3515 Score = 87.8 bits (96), Expect = 6e-14 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 4067 GAGAGAGTTCTGGCGCGATTTTATTCATCGCAAAGGCGAAACGACAGCGTTTGTTTACGC 4126 ||||||||||| || |||| |||| ||||| || || |||| |||||| || |||||| Sbjct 3419 GAGAGAGTTCTCGCACGATC--ATTCGTCGCAGAGACGGAACGTCAGCGTCTGCTTACGC 3476 Query 4127 TGCCGCTTGCGTTCCGGGGCGCTCCTCTCCGC 4158 |||||||| || || |||||||| ||||| || Sbjct 3477 TGCCGCTTACGATCTGGGGCGCTGCTCTCAGC 3508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16699973806205