Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008954.1
Length=4351
Score E
Sequences producing significant alignments: (Bits) Value
seq4069 132 1e-27
>seq4069
Length=477175
Score = 132 bits (146), Expect = 1e-27
Identities = 249/362 (69%), Gaps = 47/362 (13%)
Strand=Plus/Plus
Query 3296 ATGGTGTATACTATTAGTTTGTAAGTTCTAGACTCTAAGGGTGATGGTGTATATTTTTTA 3355
||| |||| || ||||||||||||||||||||||||||| |||||||| |||| || | |
Sbjct 476509 ATGCTGTACACGATTAGTTTGTAAGTTCTAGACTCTAAGAGTGATGGTATATAGTTATAA 476568
Query 3356 GCCACAACTG--TATCTACCTCATACGTGTGCCTCATACttttttgttttgttatttcta 3413
|||||| ||| ||||||| ||||||||||| || || | || ||| |
Sbjct 476569 GCCACATCTGTATATCTACTTCATACGTGTG----------GTTAGTGATTTTCTTT-TT 476617
Query 3414 tttttAACTAGTTTGTAGAAACAAGGAGGTTATGCT-TATATGTGCATGTAA----ATTT 3468
|||| ||| ||||| ||| ||| || | | ||||| | | ||| ||
Sbjct 476618 TTTTCAAC----TTGTACAAATCAGGCTGTATTCATATATATATTATTATAAACGGATGC 476673
Query 3469 TACCGCATTCCAGGCTCAAGTGAGAGAGTCAATTGGTTTAATCATGCAATTGTTACAGTC 3528
||||||||| ||||||| ||| |||| |||||||| || | | ||| | ||||||
Sbjct 476674 TACCGCATTTCAGGCTC-AGT-AGAGTATCAATTGGGGTAGTAGTTCAAATTATACAGTG 476731
Query 3529 AATAAATATATATTTACAAACTTGTAGATAAAACGCAGAATTTCATTTCCATA--TACCT 3586
|| |||||| ||||| |||| ||||||| |||||||||| || ||
Sbjct 476732 CAT--------------AAACTTCTAGATTAAACACAGAATTCCATTTCCATATGTAGCT 476777
Query 3587 ACCCCTTATCATAAGCTGAGCAGGCTAGATAAGAGCATGTTTACTCCATGAACAGTAATT 3646
||| |||| || | || ||||||||| |||||| ||| || |||||| ||
Sbjct 476778 GTCCC----CATAGGC---GACGGATAGATAAGATCATGTTCACTGTATAAACAGTCATG 476830
Query 3647 AG 3648
||
Sbjct 476831 AG 476832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13810516755620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |