Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008954.1 Length=4351 Score E Sequences producing significant alignments: (Bits) Value seq4069 132 1e-27 >seq4069 Length=477175 Score = 132 bits (146), Expect = 1e-27 Identities = 249/362 (69%), Gaps = 47/362 (13%) Strand=Plus/Plus Query 3296 ATGGTGTATACTATTAGTTTGTAAGTTCTAGACTCTAAGGGTGATGGTGTATATTTTTTA 3355 ||| |||| || ||||||||||||||||||||||||||| |||||||| |||| || | | Sbjct 476509 ATGCTGTACACGATTAGTTTGTAAGTTCTAGACTCTAAGAGTGATGGTATATAGTTATAA 476568 Query 3356 GCCACAACTG--TATCTACCTCATACGTGTGCCTCATACttttttgttttgttatttcta 3413 |||||| ||| ||||||| ||||||||||| || || | || ||| | Sbjct 476569 GCCACATCTGTATATCTACTTCATACGTGTG----------GTTAGTGATTTTCTTT-TT 476617 Query 3414 tttttAACTAGTTTGTAGAAACAAGGAGGTTATGCT-TATATGTGCATGTAA----ATTT 3468 |||| ||| ||||| ||| ||| || | | ||||| | | ||| || Sbjct 476618 TTTTCAAC----TTGTACAAATCAGGCTGTATTCATATATATATTATTATAAACGGATGC 476673 Query 3469 TACCGCATTCCAGGCTCAAGTGAGAGAGTCAATTGGTTTAATCATGCAATTGTTACAGTC 3528 ||||||||| ||||||| ||| |||| |||||||| || | | ||| | |||||| Sbjct 476674 TACCGCATTTCAGGCTC-AGT-AGAGTATCAATTGGGGTAGTAGTTCAAATTATACAGTG 476731 Query 3529 AATAAATATATATTTACAAACTTGTAGATAAAACGCAGAATTTCATTTCCATA--TACCT 3586 || |||||| ||||| |||| ||||||| |||||||||| || || Sbjct 476732 CAT--------------AAACTTCTAGATTAAACACAGAATTCCATTTCCATATGTAGCT 476777 Query 3587 ACCCCTTATCATAAGCTGAGCAGGCTAGATAAGAGCATGTTTACTCCATGAACAGTAATT 3646 ||| |||| || | || ||||||||| |||||| ||| || |||||| || Sbjct 476778 GTCCC----CATAGGC---GACGGATAGATAAGATCATGTTCACTGTATAAACAGTCATG 476830 Query 3647 AG 3648 || Sbjct 476831 AG 476832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13810516755620