Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008966.1
Length=3638
Score E
Sequences producing significant alignments: (Bits) Value
seq1280 565 6e-158
seq3934 98.7 2e-17
>seq1280
Length=289563
Score = 565 bits (626), Expect = 6e-158
Identities = 526/666 (79%), Gaps = 4/666 (1%)
Strand=Plus/Minus
Query 2699 CCAGTATCTTAAGCATACTGGAGGGTCTTGCAAATTGCAGCTTAAGGCTCCGAGCGACGT 2758
|||||||||| ||||||||| ||||||||| || || ||||| ||||| | ||| ||
Sbjct 29194 CCAGTATCTTCAGCATACTGCAGGGTCTTGGGAAATGTAGCTTGAGGCTGCAGACGAAGT 29135
Query 2759 GTCAGAGTGTACAGAGCCTACGGAGATCGTGCCGATTGCATCTCCTACCTACTTTTCATG 2818
|||||||||| || |||||||| |||| || ||||||||||||||| |||||||||||
Sbjct 29134 GTCAGAGTGTTCAAAGCCTACGAAGATGATGTCGATTGCATCTCCTATCTACTTTTCATA 29075
Query 2819 AGTTGACCAACTTACCGTATGTTACATGCGATTGATACAAACCCACGGGAACTGCGATCA 2878
|||| |||| |||||| |||||| |||| ||| |||||||||||| |||| || |||||
Sbjct 29074 AGTTAACCAGCTTACCATATGTTGGATGCAATTAATACAAACCCACAGGAATTGGGATCA 29015
Query 2879 CTGGAGCTGCCTGCCAGGGTTTCAATACCCATTGAAAAATCATACACTATCAGGAGGAAA 2938
| ||||||||||| |||||||| |||||||||||||||||| | || ||| | ||| |
Sbjct 29014 CCTGAGCTGCCTGCTAGGGTTTCGATACCCATTGAAAAATCACAAACAATCGGAAGGGTA 28955
Query 2939 AGAATGA--AAAAAGCAAAGATTATCATTTATCCATTTATTGATCTTCAAAACCCACAGT 2996
|| | | |||||||| |||| |||||| || ||| |||||||||| ||||| ||| |
Sbjct 28954 AGGGTAAATAAAAAGCAGAGATCATCATTGATACATGTATTGATCTTTAAAACTGACACT 28895
Query 2997 AGTAGGCAAGTATACTAATATGTTAGACGCAGCTAACAAAACCTGACGCTATCCTTTCAC 3056
|| |||| ||||||| |||| |||||| ||| ||||| |||||||| ||| | ||
Sbjct 28894 AGCAGGCGAGTATACCAATACGTTAGATGCACCTAACGAAACCTGATGCTGCCTCATCGT 28835
Query 3057 AAGGCACAATGAAACTTTTATGAACCTTAAGTCAAAATTTCAGAGAAAACACTGGAAATA 3116
||| ||||||| ||| |||| ||| |||| |||||| ||||||| ||| ||||
Sbjct 28834 GAGGTACAATGAGACTCTTATACACCATAAGATAAAATTCGAGAGAAA--ACTAAAAATG 28777
Query 3117 AATCAATGGTCGATTGGGATGGTGGAAGAAGCCCAACCGTCATTATTTGAAGTACGCTCT 3176
||||| || ||||||||| |||||| | | ||| | | ||| | ||||| | ||| |
Sbjct 28776 AATCAGGTGTAGATTGGGATTGTGGAAAACGTCCATCACTAATTTTCTGAAGAATGCTGT 28717
Query 3177 CGCGACTGCAATCGCGATAGCTGCCACCGCCGCTCCTTGAGCCCAATGTGCTCCTCTTCG 3236
|||| |||| | | | |||| |||||||| || |||||||||| |||||| ||||||
Sbjct 28716 CGCGGTTGCAGCCACAACAGCTACCACCGCCCCTGCTTGAGCCCACTGTGCTTGTCTTCG 28657
Query 3237 AGCTTCAGTGGCATGTCGCTTGGCTGCTTCGAATTGTTCAGCAGCTCTTTCTTCCCGCTT 3296
|||||| ||||| || ||| |||||||||| ||||| |||||| |||||| | | |
Sbjct 28656 AGCTTCGATGGCACGTAGCTCGGCTGCTTCGCGTTGTTTCGCAGCTTTTTCTTTCTGTCT 28597
Query 3297 GCGACATTCAGCCGCATGTTCCTGCGCTTTTTCTTCTTGTCGGCGAAGCTCATCGCGCCG 3356
||||||| | ||||||| || |||| ||| ||||||||||||||||||| ||| ||||
Sbjct 28596 GCGACATCCGGCCGCATATTTCTGCACTTCTTCTTCTTGTCGGCGAAGCGCATATCGCCA 28537
Query 3357 ATGCTC 3362
||||||
Sbjct 28536 ATGCTC 28531
Score = 331 bits (366), Expect = 2e-87
Identities = 477/664 (72%), Gaps = 39/664 (6%)
Strand=Plus/Minus
Query 764 CCAGTATCTTTAGCATACTGCAGGTTCTTGCAAATTGCAGCTTGAGGCTGCAAGCGAAGT 823
|||||||||| ||||||||||||| ||||| || || |||||||||||||| ||||||
Sbjct 29194 CCAGTATCTTCAGCATACTGCAGGGTCTTGGGAAATGTAGCTTGAGGCTGCAGACGAAGT 29135
Query 824 ATCAC--TGTTCAGAGCCTACGAAGATCGTGTCGATGACATCTCCTATCTACTTTTCATA 881
||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 29134 GTCAGAGTGTTCAAAGCCTACGAAGATGATGTCGATTGCATCTCCTATCTACTTTTCATA 29075
Query 882 ACTTAACCGACTTAACATATGTTGGATGCCATTGATACAAATCTACAGAAACTGCGATCG 941
| |||||| |||| |||||||||||||| ||| ||||||| | |||| || || ||||
Sbjct 29074 AGTTAACCAGCTTACCATATGTTGGATGCAATTAATACAAACCCACAGGAATTGGGATCA 29015
Query 942 GCCGAAATGCCTATTAGAATTTTAATACTTATTGAAAAATAATACACTATGGCAA---AA 998
| || ||||| ||| ||| |||| |||||||||| | | || || | || |
Sbjct 29014 CCTGAGCTGCCTGCTAGGGTTTCGATACCCATTGAAAAATCACAAACAATCGGAAGGGTA 28955
Query 999 AGTGGaa--aaaaaaCAAAGATTATTATTTATGCATTTATTGATCTTCAAAACTGATGGT 1056
|| | || ||||| || |||| || ||| || ||| |||||||||| |||||||| |
Sbjct 28954 AGGGTAAATAAAAAGCAGAGATCATCATTGATACATGTATTGATCTTTAAAACTGACACT 28895
Query 1057 AGCAGGCGAGTATGCTATTATGTTGGACGCAGCCAACGAAACCTGGCGCTATCCTATCAT 1116
||||||||||||| | | || ||| || ||| | ||||||||||| ||| | ||| |
Sbjct 28894 AGCAGGCGAGTATACCAATACGTTAGATGCACCTAACGAAACCTGATGCTGCCTCATCGT 28835
Query 1117 --ATCACAATGAGATACTGTTA-ACA---------AAAATGAGAGAGAACAGTAAGAATA 1164
|||||||| ||| ||| ||| ||||| ||||||| | ||| |||
Sbjct 28834 GAGGTACAATGAG--ACTCTTATACACCATAAGATAAAATTCGAGAGAAAACTAAAAATG 28777
Query 1165 AAGTACTTGT---GTGACTTGGTGGAACAAACG--CAACACTCACTTCCTGAACGCTCTC 1219
|| | ||| || | ||||| ||||| || |||| | || ||||
Sbjct 28776 AATCAGGTGTAGATTGGGATTGTGGA--AAACGTCCATCACTAATTTTCTGA-------- 28727
Query 1220 GAGGCTCCGGCCGCCATGGCGGCCGCAGCAGATATCAACGCCGCATTTCGAGCCTTGTCT 1279
|| | | | ||| | || ||| || ||| || || |||| | | ||||| | |
Sbjct 28726 -AGAATGCTGTCGCGGTTGCAGCCACAACAGCTACCACCGCCCCTGCTTGAGCCCACTGT 28668
Query 1280 GCTTCTCTTTGAGCGTTCG-CGGCCTGTTGCCTGGCTGCCTCAGCTTGTTCCTTAGCTTT 1338
|||| |||| |||| |||| ||| || || |||||| || ||||| | ||||||
Sbjct 28667 GCTTGTCTTCGAGC-TTCGATGGCACGTAGCTCGGCTGCTTCGCGTTGTTTCGCAGCTTT 28609
Query 1339 TTCTTCCCGTCTGCGGCATTCGGCAGTATATTCCCGCACTCGTTGTTCTTGGCGGCGAAG 1398
||||| | ||||||| ||| |||| | ||||| | ||||| || |||||| ||||||||
Sbjct 28608 TTCTTTCTGTCTGCGACATCCGGCCGCATATTTCTGCACTTCTTCTTCTTGTCGGCGAAG 28549
Query 1399 CTCA 1402
| ||
Sbjct 28548 CGCA 28545
>seq3934
Length=153085
Score = 98.7 bits (108), Expect = 2e-17
Identities = 96/120 (80%), Gaps = 7/120 (6%)
Strand=Plus/Minus
Query 3248 CATGTCGCTTGGCTGCTT--CGAATTGTTCAGCAGCTCTTTCTTCCCGCTTGCGACATTC 3305
||||||||| |||||||| ||| | |||| ||||| ||||||| | |||||||||
Sbjct 150484 CATGTCGCTCGGCTGCTTYACGATGT-TTCA-CAGCTTCTTCTTCCAGTTTGCGACATCG 150427
Query 3306 AGCCGCATGTTCCTGC---GCTTTTTCTTCTTGTCGGCGAAGCTCATCGCGCCGATGCTC 3362
|||||||||| ||| |||| ||||||||||||||||||| ||| |||| ||||||
Sbjct 150426 GGCCGCATGTTTYTGCATTGCTTCTTCTTCTTGTCGGCGAAGCGCATATCGCCAATGCTC 150367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 11529029627085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |