Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008966.1 Length=3638 Score E Sequences producing significant alignments: (Bits) Value seq1280 565 6e-158 seq3934 98.7 2e-17 >seq1280 Length=289563 Score = 565 bits (626), Expect = 6e-158 Identities = 526/666 (79%), Gaps = 4/666 (1%) Strand=Plus/Minus Query 2699 CCAGTATCTTAAGCATACTGGAGGGTCTTGCAAATTGCAGCTTAAGGCTCCGAGCGACGT 2758 |||||||||| ||||||||| ||||||||| || || ||||| ||||| | ||| || Sbjct 29194 CCAGTATCTTCAGCATACTGCAGGGTCTTGGGAAATGTAGCTTGAGGCTGCAGACGAAGT 29135 Query 2759 GTCAGAGTGTACAGAGCCTACGGAGATCGTGCCGATTGCATCTCCTACCTACTTTTCATG 2818 |||||||||| || |||||||| |||| || ||||||||||||||| ||||||||||| Sbjct 29134 GTCAGAGTGTTCAAAGCCTACGAAGATGATGTCGATTGCATCTCCTATCTACTTTTCATA 29075 Query 2819 AGTTGACCAACTTACCGTATGTTACATGCGATTGATACAAACCCACGGGAACTGCGATCA 2878 |||| |||| |||||| |||||| |||| ||| |||||||||||| |||| || ||||| Sbjct 29074 AGTTAACCAGCTTACCATATGTTGGATGCAATTAATACAAACCCACAGGAATTGGGATCA 29015 Query 2879 CTGGAGCTGCCTGCCAGGGTTTCAATACCCATTGAAAAATCATACACTATCAGGAGGAAA 2938 | ||||||||||| |||||||| |||||||||||||||||| | || ||| | ||| | Sbjct 29014 CCTGAGCTGCCTGCTAGGGTTTCGATACCCATTGAAAAATCACAAACAATCGGAAGGGTA 28955 Query 2939 AGAATGA--AAAAAGCAAAGATTATCATTTATCCATTTATTGATCTTCAAAACCCACAGT 2996 || | | |||||||| |||| |||||| || ||| |||||||||| ||||| ||| | Sbjct 28954 AGGGTAAATAAAAAGCAGAGATCATCATTGATACATGTATTGATCTTTAAAACTGACACT 28895 Query 2997 AGTAGGCAAGTATACTAATATGTTAGACGCAGCTAACAAAACCTGACGCTATCCTTTCAC 3056 || |||| ||||||| |||| |||||| ||| ||||| |||||||| ||| | || Sbjct 28894 AGCAGGCGAGTATACCAATACGTTAGATGCACCTAACGAAACCTGATGCTGCCTCATCGT 28835 Query 3057 AAGGCACAATGAAACTTTTATGAACCTTAAGTCAAAATTTCAGAGAAAACACTGGAAATA 3116 ||| ||||||| ||| |||| ||| |||| |||||| ||||||| ||| |||| Sbjct 28834 GAGGTACAATGAGACTCTTATACACCATAAGATAAAATTCGAGAGAAA--ACTAAAAATG 28777 Query 3117 AATCAATGGTCGATTGGGATGGTGGAAGAAGCCCAACCGTCATTATTTGAAGTACGCTCT 3176 ||||| || ||||||||| |||||| | | ||| | | ||| | ||||| | ||| | Sbjct 28776 AATCAGGTGTAGATTGGGATTGTGGAAAACGTCCATCACTAATTTTCTGAAGAATGCTGT 28717 Query 3177 CGCGACTGCAATCGCGATAGCTGCCACCGCCGCTCCTTGAGCCCAATGTGCTCCTCTTCG 3236 |||| |||| | | | |||| |||||||| || |||||||||| |||||| |||||| Sbjct 28716 CGCGGTTGCAGCCACAACAGCTACCACCGCCCCTGCTTGAGCCCACTGTGCTTGTCTTCG 28657 Query 3237 AGCTTCAGTGGCATGTCGCTTGGCTGCTTCGAATTGTTCAGCAGCTCTTTCTTCCCGCTT 3296 |||||| ||||| || ||| |||||||||| ||||| |||||| |||||| | | | Sbjct 28656 AGCTTCGATGGCACGTAGCTCGGCTGCTTCGCGTTGTTTCGCAGCTTTTTCTTTCTGTCT 28597 Query 3297 GCGACATTCAGCCGCATGTTCCTGCGCTTTTTCTTCTTGTCGGCGAAGCTCATCGCGCCG 3356 ||||||| | ||||||| || |||| ||| ||||||||||||||||||| ||| |||| Sbjct 28596 GCGACATCCGGCCGCATATTTCTGCACTTCTTCTTCTTGTCGGCGAAGCGCATATCGCCA 28537 Query 3357 ATGCTC 3362 |||||| Sbjct 28536 ATGCTC 28531 Score = 331 bits (366), Expect = 2e-87 Identities = 477/664 (72%), Gaps = 39/664 (6%) Strand=Plus/Minus Query 764 CCAGTATCTTTAGCATACTGCAGGTTCTTGCAAATTGCAGCTTGAGGCTGCAAGCGAAGT 823 |||||||||| ||||||||||||| ||||| || || |||||||||||||| |||||| Sbjct 29194 CCAGTATCTTCAGCATACTGCAGGGTCTTGGGAAATGTAGCTTGAGGCTGCAGACGAAGT 29135 Query 824 ATCAC--TGTTCAGAGCCTACGAAGATCGTGTCGATGACATCTCCTATCTACTTTTCATA 881 ||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 29134 GTCAGAGTGTTCAAAGCCTACGAAGATGATGTCGATTGCATCTCCTATCTACTTTTCATA 29075 Query 882 ACTTAACCGACTTAACATATGTTGGATGCCATTGATACAAATCTACAGAAACTGCGATCG 941 | |||||| |||| |||||||||||||| ||| ||||||| | |||| || || |||| Sbjct 29074 AGTTAACCAGCTTACCATATGTTGGATGCAATTAATACAAACCCACAGGAATTGGGATCA 29015 Query 942 GCCGAAATGCCTATTAGAATTTTAATACTTATTGAAAAATAATACACTATGGCAA---AA 998 | || ||||| ||| ||| |||| |||||||||| | | || || | || | Sbjct 29014 CCTGAGCTGCCTGCTAGGGTTTCGATACCCATTGAAAAATCACAAACAATCGGAAGGGTA 28955 Query 999 AGTGGaa--aaaaaaCAAAGATTATTATTTATGCATTTATTGATCTTCAAAACTGATGGT 1056 || | || ||||| || |||| || ||| || ||| |||||||||| |||||||| | Sbjct 28954 AGGGTAAATAAAAAGCAGAGATCATCATTGATACATGTATTGATCTTTAAAACTGACACT 28895 Query 1057 AGCAGGCGAGTATGCTATTATGTTGGACGCAGCCAACGAAACCTGGCGCTATCCTATCAT 1116 ||||||||||||| | | || ||| || ||| | ||||||||||| ||| | ||| | Sbjct 28894 AGCAGGCGAGTATACCAATACGTTAGATGCACCTAACGAAACCTGATGCTGCCTCATCGT 28835 Query 1117 --ATCACAATGAGATACTGTTA-ACA---------AAAATGAGAGAGAACAGTAAGAATA 1164 |||||||| ||| ||| ||| ||||| ||||||| | ||| ||| Sbjct 28834 GAGGTACAATGAG--ACTCTTATACACCATAAGATAAAATTCGAGAGAAAACTAAAAATG 28777 Query 1165 AAGTACTTGT---GTGACTTGGTGGAACAAACG--CAACACTCACTTCCTGAACGCTCTC 1219 || | ||| || | ||||| ||||| || |||| | || |||| Sbjct 28776 AATCAGGTGTAGATTGGGATTGTGGA--AAACGTCCATCACTAATTTTCTGA-------- 28727 Query 1220 GAGGCTCCGGCCGCCATGGCGGCCGCAGCAGATATCAACGCCGCATTTCGAGCCTTGTCT 1279 || | | | ||| | || ||| || ||| || || |||| | | ||||| | | Sbjct 28726 -AGAATGCTGTCGCGGTTGCAGCCACAACAGCTACCACCGCCCCTGCTTGAGCCCACTGT 28668 Query 1280 GCTTCTCTTTGAGCGTTCG-CGGCCTGTTGCCTGGCTGCCTCAGCTTGTTCCTTAGCTTT 1338 |||| |||| |||| |||| ||| || || |||||| || ||||| | |||||| Sbjct 28667 GCTTGTCTTCGAGC-TTCGATGGCACGTAGCTCGGCTGCTTCGCGTTGTTTCGCAGCTTT 28609 Query 1339 TTCTTCCCGTCTGCGGCATTCGGCAGTATATTCCCGCACTCGTTGTTCTTGGCGGCGAAG 1398 ||||| | ||||||| ||| |||| | ||||| | ||||| || |||||| |||||||| Sbjct 28608 TTCTTTCTGTCTGCGACATCCGGCCGCATATTTCTGCACTTCTTCTTCTTGTCGGCGAAG 28549 Query 1399 CTCA 1402 | || Sbjct 28548 CGCA 28545 >seq3934 Length=153085 Score = 98.7 bits (108), Expect = 2e-17 Identities = 96/120 (80%), Gaps = 7/120 (6%) Strand=Plus/Minus Query 3248 CATGTCGCTTGGCTGCTT--CGAATTGTTCAGCAGCTCTTTCTTCCCGCTTGCGACATTC 3305 ||||||||| |||||||| ||| | |||| ||||| ||||||| | ||||||||| Sbjct 150484 CATGTCGCTCGGCTGCTTYACGATGT-TTCA-CAGCTTCTTCTTCCAGTTTGCGACATCG 150427 Query 3306 AGCCGCATGTTCCTGC---GCTTTTTCTTCTTGTCGGCGAAGCTCATCGCGCCGATGCTC 3362 |||||||||| ||| |||| ||||||||||||||||||| ||| |||| |||||| Sbjct 150426 GGCCGCATGTTTYTGCATTGCTTCTTCTTCTTGTCGGCGAAGCGCATATCGCCAATGCTC 150367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11529029627085