Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008968.1
Length=3868
Score E
Sequences producing significant alignments: (Bits) Value
seq1280 363 4e-97
>seq1280
Length=289563
Score = 363 bits (402), Expect = 4e-97
Identities = 450/613 (73%), Gaps = 27/613 (4%)
Strand=Plus/Minus
Query 2954 AGGCTGCAAGCGAAGTTGCTAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCATC 3013
|||||||| |||||| | | ||||||| ||||||||||||| |||||||||||||
Sbjct 29150 AGGCTGCAGACGAAGTGTCAGA--GTGTTCAAAGCCTACGAAGATGATGTCGATTGCATC 29093
Query 3014 TCCTACCTACTTTTTATATGTTAGACAACTTATCTATATGTTGT-TGCNNNNNNNNNNTA 3072
||||| |||||||| ||| |||| || |||| | |||||||| ||| |
Sbjct 29092 TCCTATCTACTTTTCATAAGTTAACCAGCTTACC-ATATGTTGGATGC-----------A 29045
Query 3073 ATGGATACAAACCCACTGGAACTGCAATCGCCAGAGCCGTTTGCCAGGGTTTCAATACCT 3132
|| |||||||||||| |||| || ||| || |||| | ||| |||||||| |||||
Sbjct 29044 ATTAATACAAACCCACAGGAATTGGGATCACCTGAGCTGCCTGCTAGGGTTTCGATACCC 28985
Query 3133 ATTGAACAATTATGCTCTATCAGTAGGGTTAGAGTAAG-AAAATGCAGAGATTATCATTT 3191
|||||| ||| | | ||| | ||||| || |||| |||| |||||||| ||||||
Sbjct 28984 ATTGAAAAATCACAAACAATCGGAAGGGTAAGGGTAAATAAAAAGCAGAGATCATCATTG 28925
Query 3192 ATCCATTTATTGATCTTTAAAACTGACAGTAGTAGGCGAGTATGTTGATATGTTAGGCGC 3251
|| ||| ||||||||||||||||||||| ||| |||||||||| ||| ||||| ||
Sbjct 28924 ATACATGTATTGATCTTTAAAACTGACACTAGCAGGCGAGTATACCAATACGTTAGATGC 28865
Query 3252 AGCTAACAGAACCTGGCCCTATCCTAGCACATGGAACAATGACACTTTTATACACTGTAA 3311
| ||||| |||||| || | | | || ||||||| ||| |||||||| |||
Sbjct 28864 ACCTAACGAAACCTGATGCTGCCTCATCGTGAGGTACAATGAGACTCTTATACACCATAA 28805
Query 3312 GATAA-----GAGGGAATTCTAAT------TCCCTTATTGATTGCGATGGTGGAAGAAGT 3360
||||| ||| ||| |||| || | | ||||| ||| |||||| | ||
Sbjct 28804 GATAAAATTCGAGAGAAAACTAAAAATGAATCAGGTGTAGATTGGGATTGTGGAAAACGT 28745
Query 3361 CCAACACTTATTTTCTGAACCACGCTCTCGCGGCTGCGGCCGCGACAGCTACCCCCGCCG 3420
||| |||| |||||||||| | ||| |||||| ||| ||| | ||||||||| |||||
Sbjct 28744 CCATCACTAATTTTCTGAAGAATGCTGTCGCGGTTGCAGCCACAACAGCTACCACCGCCC 28685
Query 3421 CGTTTCGAGCCCGATCTGCTTGCTTTCGAGATTCCTCGGCCGCTCGCTGGGCTGCCTCGG 3480
| | |||||| | |||||| |||||| ||| ||| | ||| |||||| |||
Sbjct 28684 CTGCTTGAGCCCACTGTGCTTGTCTTCGAGCTTCGATGGCACGTAGCTCGGCTGCTTCGC 28625
Query 3481 CTAGTGCCTTAGCTCTTTCTTCCCGTTGGCGACATTCGGCCGCATATTTCTGCACTTTTT 3540
| || | |||| |||||| | || ||||||| ||||||||||||||||||||| ||
Sbjct 28624 GTTGTTTCGCAGCTTTTTCTTTCTGTCTGCGACATCCGGCCGCATATTTCTGCACTTCTT 28565
Query 3541 CTTCTTGTCGACG 3553
|||||||||| ||
Sbjct 28564 CTTCTTGTCGGCG 28552
Score = 158 bits (174), Expect = 3e-35
Identities = 145/181 (80%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 2753 AGGCTGCAAGCGAAGTTGCAAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCATC 2812
|||||||| |||||| || | ||||||| ||||||||||||| |||||||||||||
Sbjct 29150 AGGCTGCAGACGAAGTGTCAGA--GTGTTCAAAGCCTACGAAGATGATGTCGATTGCATC 29093
Query 2813 TCCTACCTACTTTTTATATGTTAGACGACTTATCTATATGTTTCATACAATTGATACAAA 2872
||||| |||||||| ||| |||| | |||| | ||||||| || ||||| |||||||
Sbjct 29092 TCCTATCTACTTTTCATAAGTTAACCAGCTTA-CCATATGTTGGATGCAATTAATACAAA 29034
Query 2873 CCCACTGGAACTGCAATCGTCAGAGCTGGTTGCCGGGGTTTCAATACCTATTGAAAAATC 2932
||||| |||| || ||| | |||||| ||| ||||||| ||||| |||||||||||
Sbjct 29033 CCCACAGGAATTGGGATCACCTGAGCTGCCTGCTAGGGTTTCGATACCCATTGAAAAATC 28974
Query 2933 A 2933
|
Sbjct 28973 A 28973
Score = 96.9 bits (106), Expect = 9e-17
Identities = 94/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 1518 CTATTTACTTTTCATATGTTAACTAACTTACCATATGTTTCATGCAATTGATACAAACCT 1577
|||| ||||||||||| |||||| | ||||||||||||| |||||||| |||||||||
Sbjct 29090 CTATCTACTTTTCATAAGTTAACCAGCTTACCATATGTTGGATGCAATTAATACAAACCC 29031
Query 1578 ACTGGAACTGCAATCGCCAGAGTTGGTTGCCAGAGTTTCAATATCTCCCGTGAAAAAACA 1637
|| |||| || ||| || ||| || ||| || ||||| ||| || ||||||| ||
Sbjct 29030 ACAGGAATTGGGATCACCTGAGCTGCCTGCTAGGGTTTCGATA--CCCATTGAAAAATCA 28973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12264993216935
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