Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008968.1 Length=3868 Score E Sequences producing significant alignments: (Bits) Value seq1280 363 4e-97 >seq1280 Length=289563 Score = 363 bits (402), Expect = 4e-97 Identities = 450/613 (73%), Gaps = 27/613 (4%) Strand=Plus/Minus Query 2954 AGGCTGCAAGCGAAGTTGCTAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCATC 3013 |||||||| |||||| | | ||||||| ||||||||||||| ||||||||||||| Sbjct 29150 AGGCTGCAGACGAAGTGTCAGA--GTGTTCAAAGCCTACGAAGATGATGTCGATTGCATC 29093 Query 3014 TCCTACCTACTTTTTATATGTTAGACAACTTATCTATATGTTGT-TGCNNNNNNNNNNTA 3072 ||||| |||||||| ||| |||| || |||| | |||||||| ||| | Sbjct 29092 TCCTATCTACTTTTCATAAGTTAACCAGCTTACC-ATATGTTGGATGC-----------A 29045 Query 3073 ATGGATACAAACCCACTGGAACTGCAATCGCCAGAGCCGTTTGCCAGGGTTTCAATACCT 3132 || |||||||||||| |||| || ||| || |||| | ||| |||||||| ||||| Sbjct 29044 ATTAATACAAACCCACAGGAATTGGGATCACCTGAGCTGCCTGCTAGGGTTTCGATACCC 28985 Query 3133 ATTGAACAATTATGCTCTATCAGTAGGGTTAGAGTAAG-AAAATGCAGAGATTATCATTT 3191 |||||| ||| | | ||| | ||||| || |||| |||| |||||||| |||||| Sbjct 28984 ATTGAAAAATCACAAACAATCGGAAGGGTAAGGGTAAATAAAAAGCAGAGATCATCATTG 28925 Query 3192 ATCCATTTATTGATCTTTAAAACTGACAGTAGTAGGCGAGTATGTTGATATGTTAGGCGC 3251 || ||| ||||||||||||||||||||| ||| |||||||||| ||| ||||| || Sbjct 28924 ATACATGTATTGATCTTTAAAACTGACACTAGCAGGCGAGTATACCAATACGTTAGATGC 28865 Query 3252 AGCTAACAGAACCTGGCCCTATCCTAGCACATGGAACAATGACACTTTTATACACTGTAA 3311 | ||||| |||||| || | | | || ||||||| ||| |||||||| ||| Sbjct 28864 ACCTAACGAAACCTGATGCTGCCTCATCGTGAGGTACAATGAGACTCTTATACACCATAA 28805 Query 3312 GATAA-----GAGGGAATTCTAAT------TCCCTTATTGATTGCGATGGTGGAAGAAGT 3360 ||||| ||| ||| |||| || | | ||||| ||| |||||| | || Sbjct 28804 GATAAAATTCGAGAGAAAACTAAAAATGAATCAGGTGTAGATTGGGATTGTGGAAAACGT 28745 Query 3361 CCAACACTTATTTTCTGAACCACGCTCTCGCGGCTGCGGCCGCGACAGCTACCCCCGCCG 3420 ||| |||| |||||||||| | ||| |||||| ||| ||| | ||||||||| ||||| Sbjct 28744 CCATCACTAATTTTCTGAAGAATGCTGTCGCGGTTGCAGCCACAACAGCTACCACCGCCC 28685 Query 3421 CGTTTCGAGCCCGATCTGCTTGCTTTCGAGATTCCTCGGCCGCTCGCTGGGCTGCCTCGG 3480 | | |||||| | |||||| |||||| ||| ||| | ||| |||||| ||| Sbjct 28684 CTGCTTGAGCCCACTGTGCTTGTCTTCGAGCTTCGATGGCACGTAGCTCGGCTGCTTCGC 28625 Query 3481 CTAGTGCCTTAGCTCTTTCTTCCCGTTGGCGACATTCGGCCGCATATTTCTGCACTTTTT 3540 | || | |||| |||||| | || ||||||| ||||||||||||||||||||| || Sbjct 28624 GTTGTTTCGCAGCTTTTTCTTTCTGTCTGCGACATCCGGCCGCATATTTCTGCACTTCTT 28565 Query 3541 CTTCTTGTCGACG 3553 |||||||||| || Sbjct 28564 CTTCTTGTCGGCG 28552 Score = 158 bits (174), Expect = 3e-35 Identities = 145/181 (80%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 2753 AGGCTGCAAGCGAAGTTGCAAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCATC 2812 |||||||| |||||| || | ||||||| ||||||||||||| ||||||||||||| Sbjct 29150 AGGCTGCAGACGAAGTGTCAGA--GTGTTCAAAGCCTACGAAGATGATGTCGATTGCATC 29093 Query 2813 TCCTACCTACTTTTTATATGTTAGACGACTTATCTATATGTTTCATACAATTGATACAAA 2872 ||||| |||||||| ||| |||| | |||| | ||||||| || ||||| ||||||| Sbjct 29092 TCCTATCTACTTTTCATAAGTTAACCAGCTTA-CCATATGTTGGATGCAATTAATACAAA 29034 Query 2873 CCCACTGGAACTGCAATCGTCAGAGCTGGTTGCCGGGGTTTCAATACCTATTGAAAAATC 2932 ||||| |||| || ||| | |||||| ||| ||||||| ||||| ||||||||||| Sbjct 29033 CCCACAGGAATTGGGATCACCTGAGCTGCCTGCTAGGGTTTCGATACCCATTGAAAAATC 28974 Query 2933 A 2933 | Sbjct 28973 A 28973 Score = 96.9 bits (106), Expect = 9e-17 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 1518 CTATTTACTTTTCATATGTTAACTAACTTACCATATGTTTCATGCAATTGATACAAACCT 1577 |||| ||||||||||| |||||| | ||||||||||||| |||||||| ||||||||| Sbjct 29090 CTATCTACTTTTCATAAGTTAACCAGCTTACCATATGTTGGATGCAATTAATACAAACCC 29031 Query 1578 ACTGGAACTGCAATCGCCAGAGTTGGTTGCCAGAGTTTCAATATCTCCCGTGAAAAAACA 1637 || |||| || ||| || ||| || ||| || ||||| ||| || ||||||| || Sbjct 29030 ACAGGAATTGGGATCACCTGAGCTGCCTGCTAGGGTTTCGATA--CCCATTGAAAAATCA 28973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12264993216935