Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008977.1 Length=4225 Score E Sequences producing significant alignments: (Bits) Value seq1073 890 0.0 >seq1073 Length=12613 Score = 890 bits (986), Expect = 0.0 Identities = 779/971 (80%), Gaps = 29/971 (3%) Strand=Plus/Plus Query 2019 AACCGTCAGAACTACTCGCGACACCGCGGAAGCAAGTTGTGTTGTTTATAGTGGAAGAAA 2078 ||| |||| ||| | || |||| ||| ||||| ||||||| ||| |||||| | ||| Sbjct 9302 AACAGTCATAACGAATCACGACGCCGAGGAAGAAAGTTGT--TGTGTATAGTTGTGCAAA 9359 Query 2079 AATGGAAATAATTTCATACAATGAAAATGGTGTGGAGGAGACCCAAGATATTGCAGCGCC 2138 |||| |||||||||| || |||||||| |||| |||||| |||||||| |||||||| Sbjct 9360 AATGTCAATAATTTCAAGCAGTGAAAATGAAGTGGTGGAGACTCAAGATATCGCAGCGCC 9419 Query 2139 ACCACCGCCACTGCCCTTCACGTCGGAAAAAATTCATCTACCCCTGGAAATGATTTTTGA 2198 ||||||||||||||| | ||||||| || ||||||||||| || ||||||| ||||| | Sbjct 9420 ACCACCGCCACTGCCTTCCACGTCGAAACAAATTCATCTATCCTTGGAAATAATTTTCAA 9479 Query 2199 AATAGGGAAGTTTATGGAGTTTAAGGATTATCGGAACTTCTTACAGGCACTTTGGCCGGA 2258 ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| | Sbjct 9480 AATAGGGAAGTCCCTGGAGTTACCGGATTATCGGAACTTTTTACAGGCACTTTGGCCGAA 9539 Query 2259 GACCGACGTGAACCACATTGATCCGCGAAGATTGTGGAGGATGACGACTCACCAGCTGAC 2318 | ||||||||||||||||||||||| || ||||||| |||| ||||||||| | || Sbjct 9540 AAACGACGTGAACCACATTGATCCGCACAGGTTGTGGAAACTGACAACTCACCAGTTCAC 9599 Query 2319 GACTACGTTTTGCAACGGGAAGAAACTACGAGTAGAGTACAACCTGGATCCCTCGAGGGA 2378 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 9600 GACTACGTTTTTCAACGGGAAGAAACTACGAGTAGAGTACAACCTGGATCCCTGGAGGAA 9659 Query 2379 AGAAAATGAACAGATCCTCATTAAGGTGGACGATATGTTACCGCTGTTTCATGGACTTGT 2438 |||| |||||||||||||||| || ||| | ||||||||||||||||| ||||||||| | Sbjct 9660 AGAAGATGAACAGATCCTCATCAACGTGAATGATATGTTACCGCTGTTCCATGGACTTCT 9719 Query 2439 CCCTCCGGACGTGGGTGAATACACATCCATATCGAACTTGAGTAACTTCGCCAGAACGTC 2498 |||||| | ||| |||||| |||||| ||||| |||||| |||||||||||||| | Sbjct 9720 CCCTCCAGGCGTCAGTGAATTCACATCGATATCAAACTTGGTCAACTTCGCCAGAACAAC 9779 Query 2499 TGTTCACCTGGAGCCATGTTCGGATTACCGATACGCCTCTTGTACATGTCATCTCCAAAA 2558 |||||||| |||| ||||||||||||||||||||||||| |||| | |||||||| |||| Sbjct 9780 TGTTCACCCGGAGACATGTTCGGATTACCGATACGCCTCGTGTAGACGTCATCTCGAAAA 9839 Query 2559 CGATGAGGACGTGTGGATGGATGAACCGTTCGTAAAGCCTGAAGTGAGCGATTGCGAAAA 2618 ||||| |||| || |||||||| ||| || |||||||| |||||| |||||||||| | Sbjct 9840 CGATGCGGACCTGATGATGGATGGACCATTTGTAAAGCCCGAAGTGGGCGATTGCGACAT 9899 Query 2619 GGGTCACTTTCACCATTACTGTGCACTTCACCTTGCAGACTGGTTGGAGTTTTTCCTGCA 2678 ||||| || |||||||||||| || |||||||||||| ||||| |||||||||||| Sbjct 9900 CGGTCATTTCCACCATTACTGTTCAGATCACCTTGCAGATTGGTTAGAGTTTTTCCTGGC 9959 Query 2679 TACTTCGGTGGTGCTCCGCGAAACAGGGAAATTTCGCGACGAATATACTGCTGTAGCTTT 2738 ||||||| | ||||| ||||||||||| ||||||||||| ||| | |||||| | ||| Sbjct 9960 TACTTCGATTGTGCTTCGCGAAACAGGAAAATTTCGCGATGAAAAAACTGCTCGATATTT 10019 Query 2739 TCTAATCATACTAAAGTACATAACTTATGTTCAAGAGGCGGACGTACAGGATTCACCATT 2798 | |||||||| | |||||||| || |||||| | ||| |||||||||||| ||| Sbjct 10020 TTCAATCATACCACTGTACATAAGTTGTGTTCACGGGGCAAACGTACAGGATTGTGGATT 10079 Query 2799 GT--------TGGATATGCTATAGTAGTCGATGCGGTGGCTTACGGGTCTAACCGTGAAT 2850 | ||||| |||| |||||| |||| | || |||||||| |||| Sbjct 10080 TTGTGGATTGTGGATGTGCTTCAGTAGTTGATGTGTTGAATTACGGGTGTAAC------- 10132 Query 2851 AAGTGTATAAATGTTGGTTAGAGATCACCGTCATACTTGAAGCAGAGATCTCATCTAATA 2910 | |||||| ||||| |||| | || | | |||| || | || |||| Sbjct 10133 ----ATGTAAATGCTGGTTGCAGATTAACGCCGTGCTTGTAG-------CGCACATAATG 10181 Query 2911 TAGCAATAATATATTATAGTATGTGCCGTACATGTTCATATTTTGTATGTTTTTGTACCT 2970 |||||||||||| | |||||||||| || ||||| ||||||| | |||||||||||| Sbjct 10182 TAGCAATAATAT-CGACAGTATGTGCCATAGATGTTTATATTTTCTGTGTTTTTGTACCC 10240 Query 2971 TGCATTATTAA 2981 | | |||||| Sbjct 10241 AGAAGTATTAA 10251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13407336702050