Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008977.1
Length=4225
Score E
Sequences producing significant alignments: (Bits) Value
seq1073 890 0.0
>seq1073
Length=12613
Score = 890 bits (986), Expect = 0.0
Identities = 779/971 (80%), Gaps = 29/971 (3%)
Strand=Plus/Plus
Query 2019 AACCGTCAGAACTACTCGCGACACCGCGGAAGCAAGTTGTGTTGTTTATAGTGGAAGAAA 2078
||| |||| ||| | || |||| ||| ||||| ||||||| ||| |||||| | |||
Sbjct 9302 AACAGTCATAACGAATCACGACGCCGAGGAAGAAAGTTGT--TGTGTATAGTTGTGCAAA 9359
Query 2079 AATGGAAATAATTTCATACAATGAAAATGGTGTGGAGGAGACCCAAGATATTGCAGCGCC 2138
|||| |||||||||| || |||||||| |||| |||||| |||||||| ||||||||
Sbjct 9360 AATGTCAATAATTTCAAGCAGTGAAAATGAAGTGGTGGAGACTCAAGATATCGCAGCGCC 9419
Query 2139 ACCACCGCCACTGCCCTTCACGTCGGAAAAAATTCATCTACCCCTGGAAATGATTTTTGA 2198
||||||||||||||| | ||||||| || ||||||||||| || ||||||| ||||| |
Sbjct 9420 ACCACCGCCACTGCCTTCCACGTCGAAACAAATTCATCTATCCTTGGAAATAATTTTCAA 9479
Query 2199 AATAGGGAAGTTTATGGAGTTTAAGGATTATCGGAACTTCTTACAGGCACTTTGGCCGGA 2258
||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |
Sbjct 9480 AATAGGGAAGTCCCTGGAGTTACCGGATTATCGGAACTTTTTACAGGCACTTTGGCCGAA 9539
Query 2259 GACCGACGTGAACCACATTGATCCGCGAAGATTGTGGAGGATGACGACTCACCAGCTGAC 2318
| ||||||||||||||||||||||| || ||||||| |||| ||||||||| | ||
Sbjct 9540 AAACGACGTGAACCACATTGATCCGCACAGGTTGTGGAAACTGACAACTCACCAGTTCAC 9599
Query 2319 GACTACGTTTTGCAACGGGAAGAAACTACGAGTAGAGTACAACCTGGATCCCTCGAGGGA 2378
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 9600 GACTACGTTTTTCAACGGGAAGAAACTACGAGTAGAGTACAACCTGGATCCCTGGAGGAA 9659
Query 2379 AGAAAATGAACAGATCCTCATTAAGGTGGACGATATGTTACCGCTGTTTCATGGACTTGT 2438
|||| |||||||||||||||| || ||| | ||||||||||||||||| ||||||||| |
Sbjct 9660 AGAAGATGAACAGATCCTCATCAACGTGAATGATATGTTACCGCTGTTCCATGGACTTCT 9719
Query 2439 CCCTCCGGACGTGGGTGAATACACATCCATATCGAACTTGAGTAACTTCGCCAGAACGTC 2498
|||||| | ||| |||||| |||||| ||||| |||||| |||||||||||||| |
Sbjct 9720 CCCTCCAGGCGTCAGTGAATTCACATCGATATCAAACTTGGTCAACTTCGCCAGAACAAC 9779
Query 2499 TGTTCACCTGGAGCCATGTTCGGATTACCGATACGCCTCTTGTACATGTCATCTCCAAAA 2558
|||||||| |||| ||||||||||||||||||||||||| |||| | |||||||| ||||
Sbjct 9780 TGTTCACCCGGAGACATGTTCGGATTACCGATACGCCTCGTGTAGACGTCATCTCGAAAA 9839
Query 2559 CGATGAGGACGTGTGGATGGATGAACCGTTCGTAAAGCCTGAAGTGAGCGATTGCGAAAA 2618
||||| |||| || |||||||| ||| || |||||||| |||||| |||||||||| |
Sbjct 9840 CGATGCGGACCTGATGATGGATGGACCATTTGTAAAGCCCGAAGTGGGCGATTGCGACAT 9899
Query 2619 GGGTCACTTTCACCATTACTGTGCACTTCACCTTGCAGACTGGTTGGAGTTTTTCCTGCA 2678
||||| || |||||||||||| || |||||||||||| ||||| ||||||||||||
Sbjct 9900 CGGTCATTTCCACCATTACTGTTCAGATCACCTTGCAGATTGGTTAGAGTTTTTCCTGGC 9959
Query 2679 TACTTCGGTGGTGCTCCGCGAAACAGGGAAATTTCGCGACGAATATACTGCTGTAGCTTT 2738
||||||| | ||||| ||||||||||| ||||||||||| ||| | |||||| | |||
Sbjct 9960 TACTTCGATTGTGCTTCGCGAAACAGGAAAATTTCGCGATGAAAAAACTGCTCGATATTT 10019
Query 2739 TCTAATCATACTAAAGTACATAACTTATGTTCAAGAGGCGGACGTACAGGATTCACCATT 2798
| |||||||| | |||||||| || |||||| | ||| |||||||||||| |||
Sbjct 10020 TTCAATCATACCACTGTACATAAGTTGTGTTCACGGGGCAAACGTACAGGATTGTGGATT 10079
Query 2799 GT--------TGGATATGCTATAGTAGTCGATGCGGTGGCTTACGGGTCTAACCGTGAAT 2850
| ||||| |||| |||||| |||| | || |||||||| ||||
Sbjct 10080 TTGTGGATTGTGGATGTGCTTCAGTAGTTGATGTGTTGAATTACGGGTGTAAC------- 10132
Query 2851 AAGTGTATAAATGTTGGTTAGAGATCACCGTCATACTTGAAGCAGAGATCTCATCTAATA 2910
| |||||| ||||| |||| | || | | |||| || | || ||||
Sbjct 10133 ----ATGTAAATGCTGGTTGCAGATTAACGCCGTGCTTGTAG-------CGCACATAATG 10181
Query 2911 TAGCAATAATATATTATAGTATGTGCCGTACATGTTCATATTTTGTATGTTTTTGTACCT 2970
|||||||||||| | |||||||||| || ||||| ||||||| | ||||||||||||
Sbjct 10182 TAGCAATAATAT-CGACAGTATGTGCCATAGATGTTTATATTTTCTGTGTTTTTGTACCC 10240
Query 2971 TGCATTATTAA 2981
| | ||||||
Sbjct 10241 AGAAGTATTAA 10251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13407336702050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |