Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008979.1
Length=4264
Score E
Sequences producing significant alignments: (Bits) Value
seq1091 627 2e-176
>seq1091
Length=38165
Score = 627 bits (694), Expect = 2e-176
Identities = 610/789 (77%), Gaps = 9/789 (1%)
Strand=Plus/Minus
Query 1108 CGAGCAAAGCCAGTTCAACTCCACATAGTTCTGCGGTCCGAAAAGAGGAAGACTCAAACT 1167
|||||||||||||||| | ||| ||| || || |||| |||||||| |||||||||
Sbjct 10788 CGAGCAAAGCCAGTTCGATCCCAAATATTTTTGAAGTCCAAAAAGAGGCTAACTCAAACT 10729
Query 1168 TACCGTCTGGAAAGAAACCATCGGCTAGCACGTCCGTACCGTCTAGCNNNNNNNNNNNNN 1227
|| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 10728 TATCGTCTTCAAAGAAACCATCGGCTAGCACGTCCGTAGCGTCTAGCARCAGCAGCAC-- 10671
Query 1228 NNNNCGATAGCCATTTCTGGATTGAGACCATAAAAAGTAAGTTTCGATCTGGCGCTTACA 1287
|||||||||||||||| |||| | || ||||||||||||| |||||| |
Sbjct 10670 ----CGATAGCCATTTCTGGCTTGATGTTGTGAACAGTAAGTTTCGATGCAGCGCTTTAA 10615
Query 1288 GGAACCGACTAATAGAGTCCAATTTTTCCGAAGAACAGGCCGAGGAATTACAAAATTTAT 1347
||||| || | || |||| |||| | |||| ||||||||| ||||||||||||||
Sbjct 10614 AGAACCTACYGAGGGAATCCACTTTTACTGAAGCACAGGCCGAATCATTACAAAATTTAT 10555
Query 1348 TCCATCACGCAGCTCGACGAATGCATAACACATTTATCAACAGCGATCGCGTTATGAAAA 1407
| |||| || |||||| |||| ||||||||| ||| ||||||||||| ||||||||||
Sbjct 10554 TTTATCAAACATCTCGACAAATGTATAACACATATATAAACAGCGATCGTGTTATGAAAA 10495
Query 1408 TGCACCAGTGTCGAGAATGTGTGTTCTCAATCTGTCATCAGTGTGTGTCTTTAAGTTTTT 1467
||||| | ||||| || |||| ||||| || |||||||||||||||||| | | |||||
Sbjct 10494 TGCACAAATGTCGGGACTGTGAATTCTCGATATGTCATCAGTGTGTGTCTCTTAATTTTT 10435
Query 1468 TACACCCAGGCATGACAAGCGGTGACCCGACGACTGCAACTCTCATTGCGCCTCGAACAA 1527
||||| |||| | ||| |||||| |||| ||| ||||| || | ||||||| ||||
Sbjct 10434 TACACGTAGGCTAGGCAAACGGTGATCCGATGACCCCAACTGTCGTCGCGCCTCACACAA 10375
Query 1528 CGATCATATGCATATGTCGGCTTGCGTTCTTCCATGACCACACTAATAGATCATCGCGTT 1587
||| |||||||| |||| | |||| |||||||||| ||||||| ||| ||||||| |
Sbjct 10374 CGACTATATGCATCTGTCAGTTTGCTTTCTTCCATGCTCACACTAGCAGACCATCGCGGT 10315
Query 1588 CCGAGACGGTGAAAACCGGAAACTTGCATCGTATTA---CCAGCCTGCGTTGTGCTGTGT 1644
||||||||||||| || ||| |||| | ||||| | | ||||||||||||| ||||
Sbjct 10314 CCGAGACGGTGAATACTAGAAGCTTGGAACGTATCATCGCGAGCCTGCGTTGTGACGTGT 10255
Query 1645 GCGACACGCTGGTAATGATCGAACATCCTCAAGATGACGATAGTGAATGCAAATTCACCA 1704
|||||| | |||||||||| |||||||| || | | | | | | |||| || || |
Sbjct 10254 GCGACAAGATGGTAATGATTGAACATCCGCACGGTAAAAACTCTAACTGCACTTTGACAA 10195
Query 1705 AGTGGAGCGGTATCAATAGCAGTATTGAAAATACGTTTTACGCTCAACTTGTCGATTACG 1764
||||||||||||| || |||||| ||||| | || |||| || || ||||| ||
Sbjct 10194 AGTGGAGCGGTATAAACAGCAGTGATGAAATAGCATTCCACGCGCAGCTCATCGATCACA 10135
Query 1765 TAAAAGACATTACGACGGAAACGGTTTCTTTGGACGAGTTGTATACTTGCAACCACCACT 1824
||||| | | ||| || | ||| |||||||||| ||||||||||||||||| |||||||
Sbjct 10134 TAAAACAGTTCACGCCGCAGACGCTTTCTTTGGAAGAGTTGTATACTTGCAATCACCACT 10075
Query 1825 GCTGCCTGCTTTTCCACCGTTGTACCCAATAATGCTTCCCAACGAATCCTGCCTCTTGCC 1884
|||||||| ||||||| || ||||| ||||| |||||| | ||||||| |||||||
Sbjct 10074 GCTGCCTGTTTTTCCATCGCTGTACAGAATAAGGCTTCCGACTGAATCCTCAATCTTGCC 10015
Query 1885 GCTGTCAAC 1893
|||||||
Sbjct 10014 ATTGTCAAC 10006
Score = 125 bits (138), Expect = 2e-25
Identities = 234/352 (66%), Gaps = 50/352 (14%)
Strand=Plus/Minus
Query 2001 TATTGACAAAATAAACGCCATTACTCCTCATCTATTCTGTTTAATTTCATTACGTCGACA 2060
||| ||| ||||||| || | | | ||| || ||||| ||||||||| ||| |
Sbjct 9796 TATCGACGAAATAAAAGCTTCCAGTTCATATCCATCGTGTTTCATTTCATTAGTTCGGTA 9737
Query 2061 TGTATCTTCGCTGTAGAGCAGAAACTGTATTTCAAGAAGTAGGCCATGTTTGAAGTATCC 2120
|| ||||| ||||||||| || || || |||||||||| ||||| ||| |||
Sbjct 9736 AGTTTCTTCACTGTAGAGCGGAGTCTTGATGCAAAGAAGTAGGACATGTATGACGTA--- 9680
Query 2121 CCTTAGCCTACTTCAGCGCACTTTTGCTGAATCTTAAGACGTACG---------ACGGTT 2171
|||| | | | ||||| ||||| | |||||||||||||| || |||
Sbjct 9679 ----AGCCAAGT-CGGCGCAGTTTTGATCAATCTTAAGACGTAAAGATTATGAAACTGTT 9625
Query 2172 G------------------------------TCGTACTCTTGATCGATAGGTAAGGACCC 2201
| ||||| |||||| | ||||| ||||
Sbjct 9624 GCAATGTGATGCGGTGTTCCTTTCGCAGTCGTCGTATTCTTGACTAGTTGGTAATCACCC 9565
Query 2202 ACGAGCTGTTCGGTCAACTGGTATCCTTCTTCGAGCGGTATTATCGCCCAT---CGTTCA 2258
|||||||||||||||||||||||||| || || ||| | ||||| || || ||||
Sbjct 9564 ACGAGCTGTTCGGTCAACTGGTATCCGTCCTCCAGCTTTCTTATCTCCTATTAATATTCA 9505
Query 2259 GGGAGTCTTCCAGAGCTTAAGGACCGAGTGTAGTCGGCACAACCCGGTAAAC 2310
|||||||||||| | ||||| ||||||||||| ||||||| | | |||| ||
Sbjct 9504 GGGAGTCTTCCAAACCTTAACGACCGAGTGTAATCGGCACGATCTGGTAGAC 9453
Score = 122 bits (134), Expect = 2e-24
Identities = 124/158 (78%), Gaps = 8/158 (5%)
Strand=Plus/Minus
Query 3566 TTTACACTTTTGACATGTAATCTGCTGA-AATGTAGTGGGTATAAGTACGCTCACTTGTG 3624
||| ||| ||||||| |||||||| | | || ||| | | ||||| |||||||||
Sbjct 12354 TTTGCACGTTTGACACGTAATCTGTTCAGAAGGTATAGTG-----GTACGGTCACTTGTG 12300
Query 3625 AGCCAACTGTTGAGTTCGATTCTACAAACGACGCCACTTCTGTAATCCGTCCAAGCTTAT 3684
||||||||||| | |||| |||||||||||| | || ||||||||| | |||| | |||
Sbjct 12299 AGCCAACTGTT-ACTTCGGTTCTACAAACGATGACAGATCTGTAATCTGCCCAAACGTAT 12241
Query 3685 GGGAAGCATGATCAATATCGTAAAT-AGTATTTACTAT 3721
| ||||||||| ||| || ||||| | ||||||||||
Sbjct 12240 AGCAAGCATGATGAATGTCATAAATAAATATTTACTAT 12203
Score = 116 bits (128), Expect = 1e-22
Identities = 242/372 (65%), Gaps = 44/372 (12%)
Strand=Plus/Minus
Query 2642 AACACATGTCAATGTAGTAGTGCT---ATGCTAATGAAGTGTAAATAACTGTGGGCGTCG 2698
||||| || |||||||| |||||| ||||||| | ||||||| | ||||||||||
Sbjct 9279 AACACCTGCCAATGTAGCAGTGCTCTGATGCTAAATATATGTAAATTAGTGTGGGCGTCA 9220
Query 2699 TATCGCTTCAGTGCTAATAACCTG--TGTATCTGCACGCCGTACGAGCATGATGACCGAC 2756
|||||||| ||||| || ||| || ||||||||| ||||| |||||||| |||| | |
Sbjct 9219 TATCGCTTTAGTGCCAAAAACGTGGGTGTATCTGCGCGCCGCACGAGCATAATGAGCCAT 9160
Query 2757 CGACGTTAATTTATGGTTTGACATACCTGCGCGGTATGTCAAACCTTTATCNNNNNNNNN 2816
||| | ||||| || |||||| ||||| ||||| ||
Sbjct 9159 TGACACCATTTTATACTTCTACATACATGCGC----------ACCTT-AT---------- 9121
Query 2817 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCTTTATGCCATGAACATGGGTATTAG 2876
|||| ||| |||| | || ||||||||||
Sbjct 9120 -----------TTTCTCGCATGCATCAGAAAAATCTTAATGCTACTCACGTGGGTATTAG 9072
Query 2877 GTTTCCGCGGGTGCAGTATACGCGGAC-------GTTAGGCGTTGCTTTTGCTATTCTCA 2929
|||||||| | | |||| ||||||||| | || | || || ||||||| ||
Sbjct 9071 GTTTCCGCTGTTRCAGTTTACGCGGACAGTGGGTGCTATTCCATGGTTGCGCTATTCCCA 9012
Query 2930 TAGCGTTTTTCTACTCTTGATTGGGTTCTGTATAGCCACACGAATGTGTAGCCTGTGTTA 2989
||||||||| |||| | | ||||||| ||| | ||||||||| || ||||||
Sbjct 9011 GAGCGTTTTTGATGTCTTAGGTAGATTCTGTAAAGCTATACGAATGTGCGGCTTGTGTTT 8952
Query 2990 GACGAATGGAAG 3001
|||||||| |||
Sbjct 8951 GACGAATGAAAG 8940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13532130528155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |