Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008979.1 Length=4264 Score E Sequences producing significant alignments: (Bits) Value seq1091 627 2e-176 >seq1091 Length=38165 Score = 627 bits (694), Expect = 2e-176 Identities = 610/789 (77%), Gaps = 9/789 (1%) Strand=Plus/Minus Query 1108 CGAGCAAAGCCAGTTCAACTCCACATAGTTCTGCGGTCCGAAAAGAGGAAGACTCAAACT 1167 |||||||||||||||| | ||| ||| || || |||| |||||||| ||||||||| Sbjct 10788 CGAGCAAAGCCAGTTCGATCCCAAATATTTTTGAAGTCCAAAAAGAGGCTAACTCAAACT 10729 Query 1168 TACCGTCTGGAAAGAAACCATCGGCTAGCACGTCCGTACCGTCTAGCNNNNNNNNNNNNN 1227 || ||||| |||||||||||||||||||||||||||| |||||||| Sbjct 10728 TATCGTCTTCAAAGAAACCATCGGCTAGCACGTCCGTAGCGTCTAGCARCAGCAGCAC-- 10671 Query 1228 NNNNCGATAGCCATTTCTGGATTGAGACCATAAAAAGTAAGTTTCGATCTGGCGCTTACA 1287 |||||||||||||||| |||| | || ||||||||||||| |||||| | Sbjct 10670 ----CGATAGCCATTTCTGGCTTGATGTTGTGAACAGTAAGTTTCGATGCAGCGCTTTAA 10615 Query 1288 GGAACCGACTAATAGAGTCCAATTTTTCCGAAGAACAGGCCGAGGAATTACAAAATTTAT 1347 ||||| || | || |||| |||| | |||| ||||||||| |||||||||||||| Sbjct 10614 AGAACCTACYGAGGGAATCCACTTTTACTGAAGCACAGGCCGAATCATTACAAAATTTAT 10555 Query 1348 TCCATCACGCAGCTCGACGAATGCATAACACATTTATCAACAGCGATCGCGTTATGAAAA 1407 | |||| || |||||| |||| ||||||||| ||| ||||||||||| |||||||||| Sbjct 10554 TTTATCAAACATCTCGACAAATGTATAACACATATATAAACAGCGATCGTGTTATGAAAA 10495 Query 1408 TGCACCAGTGTCGAGAATGTGTGTTCTCAATCTGTCATCAGTGTGTGTCTTTAAGTTTTT 1467 ||||| | ||||| || |||| ||||| || |||||||||||||||||| | | ||||| Sbjct 10494 TGCACAAATGTCGGGACTGTGAATTCTCGATATGTCATCAGTGTGTGTCTCTTAATTTTT 10435 Query 1468 TACACCCAGGCATGACAAGCGGTGACCCGACGACTGCAACTCTCATTGCGCCTCGAACAA 1527 ||||| |||| | ||| |||||| |||| ||| ||||| || | ||||||| |||| Sbjct 10434 TACACGTAGGCTAGGCAAACGGTGATCCGATGACCCCAACTGTCGTCGCGCCTCACACAA 10375 Query 1528 CGATCATATGCATATGTCGGCTTGCGTTCTTCCATGACCACACTAATAGATCATCGCGTT 1587 ||| |||||||| |||| | |||| |||||||||| ||||||| ||| ||||||| | Sbjct 10374 CGACTATATGCATCTGTCAGTTTGCTTTCTTCCATGCTCACACTAGCAGACCATCGCGGT 10315 Query 1588 CCGAGACGGTGAAAACCGGAAACTTGCATCGTATTA---CCAGCCTGCGTTGTGCTGTGT 1644 ||||||||||||| || ||| |||| | ||||| | | ||||||||||||| |||| Sbjct 10314 CCGAGACGGTGAATACTAGAAGCTTGGAACGTATCATCGCGAGCCTGCGTTGTGACGTGT 10255 Query 1645 GCGACACGCTGGTAATGATCGAACATCCTCAAGATGACGATAGTGAATGCAAATTCACCA 1704 |||||| | |||||||||| |||||||| || | | | | | | |||| || || | Sbjct 10254 GCGACAAGATGGTAATGATTGAACATCCGCACGGTAAAAACTCTAACTGCACTTTGACAA 10195 Query 1705 AGTGGAGCGGTATCAATAGCAGTATTGAAAATACGTTTTACGCTCAACTTGTCGATTACG 1764 ||||||||||||| || |||||| ||||| | || |||| || || ||||| || Sbjct 10194 AGTGGAGCGGTATAAACAGCAGTGATGAAATAGCATTCCACGCGCAGCTCATCGATCACA 10135 Query 1765 TAAAAGACATTACGACGGAAACGGTTTCTTTGGACGAGTTGTATACTTGCAACCACCACT 1824 ||||| | | ||| || | ||| |||||||||| ||||||||||||||||| ||||||| Sbjct 10134 TAAAACAGTTCACGCCGCAGACGCTTTCTTTGGAAGAGTTGTATACTTGCAATCACCACT 10075 Query 1825 GCTGCCTGCTTTTCCACCGTTGTACCCAATAATGCTTCCCAACGAATCCTGCCTCTTGCC 1884 |||||||| ||||||| || ||||| ||||| |||||| | ||||||| ||||||| Sbjct 10074 GCTGCCTGTTTTTCCATCGCTGTACAGAATAAGGCTTCCGACTGAATCCTCAATCTTGCC 10015 Query 1885 GCTGTCAAC 1893 ||||||| Sbjct 10014 ATTGTCAAC 10006 Score = 125 bits (138), Expect = 2e-25 Identities = 234/352 (66%), Gaps = 50/352 (14%) Strand=Plus/Minus Query 2001 TATTGACAAAATAAACGCCATTACTCCTCATCTATTCTGTTTAATTTCATTACGTCGACA 2060 ||| ||| ||||||| || | | | ||| || ||||| ||||||||| ||| | Sbjct 9796 TATCGACGAAATAAAAGCTTCCAGTTCATATCCATCGTGTTTCATTTCATTAGTTCGGTA 9737 Query 2061 TGTATCTTCGCTGTAGAGCAGAAACTGTATTTCAAGAAGTAGGCCATGTTTGAAGTATCC 2120 || ||||| ||||||||| || || || |||||||||| ||||| ||| ||| Sbjct 9736 AGTTTCTTCACTGTAGAGCGGAGTCTTGATGCAAAGAAGTAGGACATGTATGACGTA--- 9680 Query 2121 CCTTAGCCTACTTCAGCGCACTTTTGCTGAATCTTAAGACGTACG---------ACGGTT 2171 |||| | | | ||||| ||||| | |||||||||||||| || ||| Sbjct 9679 ----AGCCAAGT-CGGCGCAGTTTTGATCAATCTTAAGACGTAAAGATTATGAAACTGTT 9625 Query 2172 G------------------------------TCGTACTCTTGATCGATAGGTAAGGACCC 2201 | ||||| |||||| | ||||| |||| Sbjct 9624 GCAATGTGATGCGGTGTTCCTTTCGCAGTCGTCGTATTCTTGACTAGTTGGTAATCACCC 9565 Query 2202 ACGAGCTGTTCGGTCAACTGGTATCCTTCTTCGAGCGGTATTATCGCCCAT---CGTTCA 2258 |||||||||||||||||||||||||| || || ||| | ||||| || || |||| Sbjct 9564 ACGAGCTGTTCGGTCAACTGGTATCCGTCCTCCAGCTTTCTTATCTCCTATTAATATTCA 9505 Query 2259 GGGAGTCTTCCAGAGCTTAAGGACCGAGTGTAGTCGGCACAACCCGGTAAAC 2310 |||||||||||| | ||||| ||||||||||| ||||||| | | |||| || Sbjct 9504 GGGAGTCTTCCAAACCTTAACGACCGAGTGTAATCGGCACGATCTGGTAGAC 9453 Score = 122 bits (134), Expect = 2e-24 Identities = 124/158 (78%), Gaps = 8/158 (5%) Strand=Plus/Minus Query 3566 TTTACACTTTTGACATGTAATCTGCTGA-AATGTAGTGGGTATAAGTACGCTCACTTGTG 3624 ||| ||| ||||||| |||||||| | | || ||| | | ||||| ||||||||| Sbjct 12354 TTTGCACGTTTGACACGTAATCTGTTCAGAAGGTATAGTG-----GTACGGTCACTTGTG 12300 Query 3625 AGCCAACTGTTGAGTTCGATTCTACAAACGACGCCACTTCTGTAATCCGTCCAAGCTTAT 3684 ||||||||||| | |||| |||||||||||| | || ||||||||| | |||| | ||| Sbjct 12299 AGCCAACTGTT-ACTTCGGTTCTACAAACGATGACAGATCTGTAATCTGCCCAAACGTAT 12241 Query 3685 GGGAAGCATGATCAATATCGTAAAT-AGTATTTACTAT 3721 | ||||||||| ||| || ||||| | |||||||||| Sbjct 12240 AGCAAGCATGATGAATGTCATAAATAAATATTTACTAT 12203 Score = 116 bits (128), Expect = 1e-22 Identities = 242/372 (65%), Gaps = 44/372 (12%) Strand=Plus/Minus Query 2642 AACACATGTCAATGTAGTAGTGCT---ATGCTAATGAAGTGTAAATAACTGTGGGCGTCG 2698 ||||| || |||||||| |||||| ||||||| | ||||||| | |||||||||| Sbjct 9279 AACACCTGCCAATGTAGCAGTGCTCTGATGCTAAATATATGTAAATTAGTGTGGGCGTCA 9220 Query 2699 TATCGCTTCAGTGCTAATAACCTG--TGTATCTGCACGCCGTACGAGCATGATGACCGAC 2756 |||||||| ||||| || ||| || ||||||||| ||||| |||||||| |||| | | Sbjct 9219 TATCGCTTTAGTGCCAAAAACGTGGGTGTATCTGCGCGCCGCACGAGCATAATGAGCCAT 9160 Query 2757 CGACGTTAATTTATGGTTTGACATACCTGCGCGGTATGTCAAACCTTTATCNNNNNNNNN 2816 ||| | ||||| || |||||| ||||| ||||| || Sbjct 9159 TGACACCATTTTATACTTCTACATACATGCGC----------ACCTT-AT---------- 9121 Query 2817 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCTTTATGCCATGAACATGGGTATTAG 2876 |||| ||| |||| | || |||||||||| Sbjct 9120 -----------TTTCTCGCATGCATCAGAAAAATCTTAATGCTACTCACGTGGGTATTAG 9072 Query 2877 GTTTCCGCGGGTGCAGTATACGCGGAC-------GTTAGGCGTTGCTTTTGCTATTCTCA 2929 |||||||| | | |||| ||||||||| | || | || || ||||||| || Sbjct 9071 GTTTCCGCTGTTRCAGTTTACGCGGACAGTGGGTGCTATTCCATGGTTGCGCTATTCCCA 9012 Query 2930 TAGCGTTTTTCTACTCTTGATTGGGTTCTGTATAGCCACACGAATGTGTAGCCTGTGTTA 2989 ||||||||| |||| | | ||||||| ||| | ||||||||| || |||||| Sbjct 9011 GAGCGTTTTTGATGTCTTAGGTAGATTCTGTAAAGCTATACGAATGTGCGGCTTGTGTTT 8952 Query 2990 GACGAATGGAAG 3001 |||||||| ||| Sbjct 8951 GACGAATGAAAG 8940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13532130528155