Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008985.1 Length=4914 Score E Sequences producing significant alignments: (Bits) Value seq3835 361 2e-96 >seq3835 Length=178785 Score = 361 bits (400), Expect = 2e-96 Identities = 400/540 (74%), Gaps = 30/540 (6%) Strand=Plus/Plus Query 3902 CTCACGGCTCTTTGCGACTTTTCGCATCTTTCTCGGGTGACTCGAGCACGGTTTTCGATG 3961 || ||| ||||||||||||| | ||||||||||| ||| ||||||||| | |||| Sbjct 1172 CTTACGATTCTTTGCGACTTTCGGAATCTTTCTCGGACGACCGTAGCACGGTTGTTGATG 1231 Query 3962 CAACTTTTGTCCCACGCTTGGTAGCTCCGGTTCTGGAGACTCCTGAGCTGCAGAAGTTAG 4021 ||||||||||| | ||||| | ||||||||||||| |||| ||| | |||||||| Sbjct 1232 CAACTTTTGTCTCGAGCTTGATGGCTCCGGTTCTGGTGACTTTTGAACAGCAGAAGTCGA 1291 Query 4022 TTTTTGAGAGCTCAAACGAGTACTGGGCTCAGATAAAGCAGCTGTTTCATTCACAGCCGA 4081 || |||| |||||||| || || ||||| || || |||||||| |||||||||||||| Sbjct 1292 TTCTTGAAAGCTCAAAGGACAACCGGGCTTAGCTACAGCAGCTGCTTCATTCACAGCCGC 1351 Query 4082 GGTACACGATGCTTCTGCTTGGTTCGGTGATTGAGAGCGTTCTAGACAAGTGGCTGCTTC 4141 |||||||||| |||| |||| | | | ||||||||||||||| | ||||| ||||||| Sbjct 1352 TGTACACGATGATTCTTCTTGATGCAGAGATTGAGAGCGTTCTGAAGAAGTGCCTGCTTC 1411 Query 4142 TATTGCCGTAACCGCAACCAATGGAATTTGTTCCTTTAGAGCAACAGGTCCTGGGGTAAA 4201 |||| ||||| ||| | ||||| || ||||||| ||| || ||| ||||||| | Sbjct 1412 TATTACCGTAGGTGCAGGCCATGGATTTCTTTCCTTTGGAGGAAGTGGTTCTGGGGTTGA 1471 Query 4202 GTCAGTAACTTCCATAGGTTCACTTTGCGAATTTCGTTCTTTTGGAGAAACACGTTCCA- 4260 ||||||| ||||| ||||||| || |||||| || ||||| |||||| | ||| || Sbjct 1472 GTCAGTATGTTCCACAGGTTCATACTGTGAATTTTGTACTTTTAGAGAAAGAGGTTTCAG 1531 Query 4261 --------GTTCT---------------------ATGGCATCTAGAGCTGCATGTAATGA 4291 ||||| ||||| || | ||||||| ||||| Sbjct 1532 GGCCACGGGTTCTGTTACTCTTTCGTTTTTGGCCATGGCGTCCAACGCTGCATTCAATGA 1591 Query 4292 ATTTCCGCTGGGTTGAGAACGACGTTTCGAGGCAGGGCCTGCACCTCCTACGGCTGCGCA 4351 |||||| | | |||| ||| | |||||||||||||||||| |||||||| |||||| | Sbjct 1592 ATTTCCTGTCGTTTGAAAACTAAGTTTCGAGGCAGGGCCTGTACCTCCTATCGCTGCGGA 1651 Query 4352 CGATGAACTTTTCCCACAACGGAGCGGAGGTTCCGAGGCAAGTTCTGTAACTTCGAGAGC 4411 ||||||||| || || | |||| |||||| | | || |||| |||||||| ||||| Sbjct 1652 AGATGAACTTCTCGTACGAAGGAGAAGAGGTTTCCGGACAGGTTCCGTAACTTCCAGAGC 1711 Score = 259 bits (286), Expect = 2e-65 Identities = 392/546 (72%), Gaps = 35/546 (6%) Strand=Plus/Plus Query 4386 GAGGCAAGTTCTGTAACTTCGAGAGCCGGCGCAGATGATAGTTCTGGCTGGCTCGGAGAT 4445 ||||||||||||||| |||| ||||||| ||| ||||| ||||| ||| |||||||||| Sbjct 1752 GAGGCAAGTTCTGTAGCTTCCGGAGCCGGGGCAAATGATGGTTCTCGCTTGCTCGGAGAT 1811 Query 4446 TCACAGTGATCAGCTCGAGAAGCTGATGCAATTTCTGATGGTAAAAGTCGCACTAGTTTC 4505 | || | ||| | | || |||| ||| ||| ||||| ||||| ||||||| | Sbjct 1812 TTACGGGTATCGGGTAGATTAGCTT---CAACTTCCAATGGTGAAAGTGGCACTAGCCCC 1868 Query 4506 ACTCTCAGCGACT---TCAGCATGATGGCATCGGGCTCGGTATTCTCGGACCCTTTCAGA 4562 || || || | | ||||||||||| | | |||||| |||||| |||||| |||| Sbjct 1869 GCTGTCGGCCATTCGTTCAGCATGATGCTACCCAACTCGGTGTTCTCGAACCCTTCCAGA 1928 Query 4563 ATTTCTAGCAACTCCTTATCTGTTTGTACAACAAGAAATATTTTACTTCGAC-TTGAAAA 4621 ||||| |||||||||| ||||| || | |||||||||| |||||||| || | |||| Sbjct 1929 ATTTCGAGCAACTCCTGATCTGCTTATCAAACAAGAAATGTTTTACTTTTACATAAAAAA 1988 Query 4622 AAGTGTGTTATGTTACATAAAGTATTTAGATCGAAACACTAACCGGTGTAAATCATC--- 4678 |||| ||||||||||||| |||||| | || |||||||| ||| || ||| | || Sbjct 1989 AAGTTTGTTATGTTACATGGAGTATTGAAATGGAAACACTGACCAGTATAATTGTTCTCG 2048 Query 4679 CTGTCGCTCCTGGTGCTCTGGAACCGCGTGGAATTAGTTCCGATCGTTCGTGAACC---T 4735 ||||||| ||||||||||| | | || || | || ||||| || || || || | Sbjct 2049 ATGTCGCTTCTGGTGCTCTGCATTCCCGAGGGAATACTTCCG-TCTTT--TGGTCCTTTT 2105 Query 4736 TCGAA---CCTTGCAAGCATTTCCTCCAAGGAAT-TCTGTAATAATTTCAGTCAATAAA- 4790 | || | || |||| |||| ||| | ||||||||||| || |||||| Sbjct 2106 TTTAAATCCTTTTGAAGCCCGCTCTCC-GGGAGTGCCTGTAATAATTAAAG-AAATAAAA 2163 Query 4791 -TAAATACTCGTGCTACAGTTTTACTGGTAAACTTTATACGTATCAAAAGAGTA-AATAA 4848 | ||| || |||||||||||||||| | | ||| ||| |||| || | Sbjct 2164 TTGAATGCTTATGCTACAGTTTTACTGTTGAGCTT----------GAAAAAGTACAACGA 2213 Query 4849 AGATTTACCGATGCTTCCTGTGCGTTATGTGGGATTGCTTTTTTGACTTCGCCCTTGTCG 4908 | ||||||| | |||| | |||| ||||| | ||| |||||||||| ||| | |||| Sbjct 2214 ACATTTACCAACTCTTCATCTGCGGTATGTAGAATTTCTTTTTTGACGTCGTGATCGTCG 2273 Query 4909 CTAGAT 4914 ||| || Sbjct 2274 CTATAT 2279 Score = 156 bits (172), Expect = 1e-34 Identities = 154/197 (78%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 348 AAACAGAGTTAAACAGTAGTCCGGTGTAAGGCAATATATCTTCGGAAGGTGATTCGGTAC 407 ||||||||||||| ||| || | ||||||| ||| |||||| |||| |||||| ||| Sbjct 2778 AAACAGAGTTAAAAAGTTGTTTGATGTAAGGGAATGCATCTTCCGAAG-TGATTCTCTAC 2836 Query 408 TGTGCCTGACAGGTTCCAG---GGTCTGGCCATGTACAGGTGATAAGCTGTTCCGTGCCT 464 | |||| ||| || |||| || | || |||||||||||||| || || || | Sbjct 2837 TTTGCCCGACGAGTGCCAGCAGGGCCCAGCGATGTACAGGTGATAGGC-----CGAGCGT 2891 Query 465 GAGAGTCGTAGCTCTTTAGAATTTTGGGTTCAGTGGTCACCACAATCTTTTCCGAATCGA 524 |||||| | |||| |||| |||| ||||||| | || ||||||||||||||||||||| Sbjct 2892 CAGAGTCATGGCTCATTAGGGTTTTCGGTTCAGCGTTCGCCACAATCTTTTCCGAATCGA 2951 Query 525 CACGATGCTGGTGGATC 541 ||||||||||||| ||| Sbjct 2952 CACGATGCTGGTGAATC 2968 Score = 102 bits (112), Expect = 3e-18 Identities = 222/326 (68%), Gaps = 26/326 (8%) Strand=Plus/Plus Query 2 TCGAGAGAGCAATAAATG-TTTGGTCCCGCGAGCTCGATTTCCAAGGATGCACACGAGGC 60 || |||||| |||||| ||| ||||| | || |||| | || ||| | ||| | Sbjct 2281 TCAAGAGAG--ATAAATTCTTTTCTCCCGAACGTTCAATTTATGAAGACGCAAATGAGAC 2338 Query 61 CGCTTGTTTCTAGTACGAACTTGATGCATCTTCCATGCTCTACACTCCAC-GCCTTCACT 119 | || || ||| | ||||||||| || ||| | | || | || | || ||| || Sbjct 2339 CTCTCATTGGAAGTTCCAACTTGATGGATATTCTTTATTTTATGCACCGCTGCGTTC-CT 2397 Query 120 CTGCTTATGCCACTTCTGTAACGTTTTATAGGAGTTAATGAGCATCGACAGTTGCAAA-T 178 ||| | | |||| |||||| |||||||| || | || ||||| | ||| ||| | Sbjct 2398 CTGGTCGTACCACACCTGTAATATTTTATAGAAGGT---GACCATCGGAAATTGTAAAGT 2454 Query 179 GGTCATGGCATAAGTGATATTTATGACAAATGCTTTTA--GAAGAATAAATTAGCAGATA 236 ||||| || | |||| | ||||||||||| ||||| |||||||||||| | |||| Sbjct 2455 GGTCAAGGTACAAGTTTCTTGTATGACAAATGATTTTACCGAAGAATAAATTTACTGATA 2514 Query 237 AACTTACACTCTTCCATGTGTT------------CGCCTCGTTTTGCCACAACGCATTGA 284 |||| || | |||||| | || || |||||| ||||||||| || | Sbjct 2515 AACTCACGTTTTTCCATTTCTTGGTATCTTTGGGTGCACCGTTTTTCCACAACGCGTTCA 2574 Query 285 ATTCCTCTGCTGCCAACTGCTTCCAC 310 || ||| |||||||||||| |||| Sbjct 2575 AT---TCTTCTGCCAACTGCTCCCAC 2597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15612027629905