Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_008989.1
Length=5108
Score E
Sequences producing significant alignments: (Bits) Value
seq1073 385 2e-103
>seq1073
Length=12613
Score = 385 bits (426), Expect = 2e-103
Identities = 385/511 (75%), Gaps = 50/511 (10%)
Strand=Plus/Plus
Query 4600 ATACAGTCAGTGATACATGAGAGTACGGGCCATAACTTCGAAACGGAGCATCGAAGGGAG 4659
|||||||||||| |||||||| |||||| | ||||| |||||| ||||||| ||||| ||
Sbjct 10954 ATACAGTCAGTGTTACATGAGCGTACGGACTATAACGTCGAAATGGAGCATTGAAGGTAG 11013
Query 4660 GTGATGAAAACCTTTTTGAACTCAGGGAAAAAAGGTATATAATGCAATGCCTCCCAAGCT 4719
| |||| | || |||| | ||||| |||| |||||||||| |||| ||| ||| ||| |
Sbjct 11014 GCGATGGATACATTTTAGTACTCAAGGAATAAAGGTATATCATGCGATGTCTCTCAATTT 11073
Query 4720 TTAGCCGTAAA-GTATATTTTTTCG-AATATAAGAATGACCATATGATTCGAAAGTGCGC 4777
| ||||| || || ||||||||| |||||||||| |||| ||||||| |||||||||
Sbjct 11074 TAGGCCGTGAACGTTAATTTTTTCGGAATATAAGAACGACCGAATGATTCAAAAGTGCGC 11133
Query 4778 ACTGTGTCGGCCGTATCACCTAATCAGTTTTCATAGCATTGATCCAATTGTAAAAAGCCT 4837
|| | |||| ||||||||| ||||||||||||||||| | ||||||||||||| ||||||
Sbjct 11134 ACCGAGTCGCCCGTATCACATAATCAGTTTTCATAGCGTCGATCCAATTGTAACAAGCCT 11193
Query 4838 GCTTGCTCATGCTTACAAGCAGGAACTTAAAACTTACTTTTCCTCACGTAGTGCATGTAG 4897
|| ||||| || | ||| ||||| | |||||||| |||| ||||||||| | |||| |
Sbjct 11194 GCCTGCTCTTGTTCACATGCAGGCATTTAAAACTAACTTATCCTCACGTCATACATGCGG 11253
Query 4898 TTGGTTCGTTACTTCAGTAGTGACAATTTCACGACCCCACCGAAGCTATACACTTTTGTG 4957
||||||||||| |||||| || | || ||||||||||||||||||||||| | |||||
Sbjct 11254 CGGGTTCGTTACTCCAGTAGAGAAACTTCCACGACCCCACCGAAGCTATACAGTGTTGTG 11313
Query 4958 AATATGCAAGTTGGTCTGCACGTGTGTTCAAATCGTAACGAAACAAAAGTGTGAACGGCT 5017
|||||||| |
Sbjct 11314 GGAATGCAAGT------------------------------------------------T 11325
Query 5018 CTTACGAACATACTTGTTGCGGGTATGTCTAGTCCCTCTGAGTTCGAGAGTGATGCAGAA 5077
|||| ||||||||| ||| | ||| ||||||||| |||| ||| |||||||| |||||
Sbjct 11326 CTTAGGAACATACTCGTTCCCGGTTTGTCTAGTCTCTCTCGTTTCAAGAGTGATACAGAA 11385
Query 5078 TGAAGTTCATAGCGTGAACGTCACGTCACCA 5108
|||||||||||||||||||||||||| ||||
Sbjct 11386 TGAAGTTCATAGCGTGAACGTCACGTTACCA 11416
Score = 215 bits (238), Expect = 2e-52
Identities = 341/494 (69%), Gaps = 52/494 (11%)
Strand=Plus/Plus
Query 4 GGGTGTT-TTCAAACTCTACGGCATGCATATCGGGACATGACTACGGCCAATATAACTGG 62
||| ||| || ||| | || | |||||||| ||||||||||||||||| |||| || |
Sbjct 11420 GGGCGTTCTTAAAATTTTATGACATGCATAGCGGGACATGACTACGGCGAATACGGCTAG 11479
Query 63 ACCACACCGCTTGCAAGCCATATGCATATAACGTCCATACTCGACGTCTACCCGTCAAGA 122
||||||| || | |||| || |||||| ||||||||||| ||||||||| ||||||||
Sbjct 11480 ACCACACGGCATAGAAGCTATGCGCATATGACGTCCATACTAGACGTCTACACGTCAAGA 11539
Query 123 GGCCCCTGCGCGACAGTTTCGAACCTGAATGTT-aaaaaaaaGTTGTATGAGTTTAGTGT 181
| ||| ||| | ||||||| ||| ||||| ||||||||| |||||||||||||||
Sbjct 11540 AACGTCTGGGCGGCTGTTTCGACGCTGCATGTTAAAAAAAAAGCCGTATGAGTTTAGTGT 11599
Query 182 TTAAACGTTTCTGTATTTTATCATTGGCTCTTTGCATAATGNNNNNNNNNNNNNNNNNCA 241
|||||| |||||| |||||||| || ||||| |||| |
Sbjct 11600 CACCACGTTTTTGTATTGTATCATTGACTTCTTGCAAAATG---------CCGAAATGCG 11650
Query 242 CGTCGTCCGCACGTGAATAACAATGCAAATCCAAGGTGAA---------CATA---TTAA 289
|||||||||||||||||||| ||||||||| |||||| || |||| | ||
Sbjct 11651 CGTCGTCCGCACGTGAATAAGAATGCAAATGCAAGGTCAAAAATATGCGCATAATGTAAA 11710
Query 290 ACATATTGTGCCGATCCCACA-----------GTTGGGTGTTTGCGTGTAGCGATAATAT 338
|||||||| | | |||| ||| ||| | | | ||| |||||| |||
Sbjct 11711 ACATATTGCGTCAATCCGACAATGATGCTGACATTGTGCGGTAACGTATAGCGACGATAA 11770
Query 339 CATAAATATAGAACCTAACTCAAGCGTAGGATGATATCTGAGGTCAGTAGTTGCTTTGAA 398
||| || || | |||||||| || | |||| || || ||||||
Sbjct 11771 CATTAACATTCATTTTAACTCAAACG-----CGTTATC--------ATATTTAATTTGAA 11817
Query 399 CGTCGAGCGTGTAGGACGCGCTCACAACTTCGCGCCGTTTTAGCAGAAACCAAAGTT--- 455
| || | || || |||| ||||||| | ||| |||| || | |||| ||||||||
Sbjct 11818 CATCTAACGAGTGGGACACGCTCACTGTTGCGCACCGTCTTCGTAGAAGCCAAAGTTCAC 11877
Query 456 --TCGCGTATCATC 467
|| |||||||||
Sbjct 11878 TATCTCGTATCATC 11891
Score = 167 bits (184), Expect = 8e-38
Identities = 238/332 (72%), Gaps = 16/332 (5%)
Strand=Plus/Plus
Query 2269 GATTAATACGCGTCATGACTATATATAGAGAAACCGATAGCTTTA--ATTGACTAATATC 2326
|||| ||| | |||||||| || ||| ||||| ||||| || ||||||| || |
Sbjct 11900 GATTGATAAGTGTCATGACCATGAATATGGAAACTGATAGTGTTGCGATTGACTCGTACC 11959
Query 2327 CGGAAAACGCTTGAACCTGTAGAACTCATTCGACCATCGCGCTGTACGCTAGTTTTTTCC 2386
| ||||| || | || ||||| ||| |||| |||| |||| |||||||||||| |
Sbjct 11960 TTGTTAACGCATGGAACTACAGAACGTATTTGACCGTCGCCCTGTTCGCTAGTTTTTTGC 12019
Query 2387 TCCTGTTGTAAAGTGCGCGTTTCCTCGTAAAATTACAATGAATTCAAAAGCAAATAAAGT 2446
| |||| ||||| || ||||||| | ||||||||||||||| ||| ||||| ||
Sbjct 12020 GCGTGTTACAAAGTCCGTATTTCCTCCT--AATTACAATGAATTCGAAAAAGAATAACGT 12077
Query 2447 G--GTCAAGAGACGCCGCCACGTTTCCAGAAGTACGTCTGCACCAGCATCACCACTCTTG 2504
| ||||| | || || || || ||| | | ||| | ||| | ||||
Sbjct 12078 GGCGTCAAAACGCGGCGGCATCATTGAAGA--GAGGACTGGATCAGAACTACCA------ 12129
Query 2505 ACGCCAAAGAGAATTACTTTTCCGTTGGAGATGATTCTTTACATGGCCAACTTCATGTGC 2564
| || || |||| ||||||||||||| | | | || ||||||| ||| |||||| |
Sbjct 12130 --GTCACAGCCAATTGCTTTTCCGTTGGATACGGTCCTCTACATGGGCAAGTTCATGGAC 12187
Query 2565 TTCCAAGACTACAGAAGGTTTATTCTGTCTCT 2596
||||||||||| | ||||||||||||||||||
Sbjct 12188 TTCCAAGACTATAAAAGGTTTATTCTGTCTCT 12219
Score = 132 bits (146), Expect = 2e-27
Identities = 106/128 (83%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 2691 ATGGTCATCGAGTACAACTTCGACCCCTCGAGAATAAGAGAAGATCGCATACTAATGAAT 2750
|| || |||||||||||||||||||| || ||| |||||||| ||| |||| |||||
Sbjct 12273 ATCGTGATCGAGTACAACTTCGACCCTTCAAGACTAAGAGAATATCAGGTACTGATGAAC 12332
Query 2751 GTCGAAACTTTGTCGCCTATTTTTGGCAGAATCGTGTCTCCAACCATaaaaaaaTTCACA 2810
||| | ||||||||||||||||||| ||||||| ||||||||||| ||| ||||| ||
Sbjct 12333 GTCAATTATTTGTCGCCTATTTTTGGCGGAATCGTATCTCCAACCATGAAAGAATTCGCA 12392
Query 2811 GGGGTTTC 2818
||||||
Sbjct 12393 ACGGTTTC 12400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16232796918735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |