Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_008989.1 Length=5108 Score E Sequences producing significant alignments: (Bits) Value seq1073 385 2e-103 >seq1073 Length=12613 Score = 385 bits (426), Expect = 2e-103 Identities = 385/511 (75%), Gaps = 50/511 (10%) Strand=Plus/Plus Query 4600 ATACAGTCAGTGATACATGAGAGTACGGGCCATAACTTCGAAACGGAGCATCGAAGGGAG 4659 |||||||||||| |||||||| |||||| | ||||| |||||| ||||||| ||||| || Sbjct 10954 ATACAGTCAGTGTTACATGAGCGTACGGACTATAACGTCGAAATGGAGCATTGAAGGTAG 11013 Query 4660 GTGATGAAAACCTTTTTGAACTCAGGGAAAAAAGGTATATAATGCAATGCCTCCCAAGCT 4719 | |||| | || |||| | ||||| |||| |||||||||| |||| ||| ||| ||| | Sbjct 11014 GCGATGGATACATTTTAGTACTCAAGGAATAAAGGTATATCATGCGATGTCTCTCAATTT 11073 Query 4720 TTAGCCGTAAA-GTATATTTTTTCG-AATATAAGAATGACCATATGATTCGAAAGTGCGC 4777 | ||||| || || ||||||||| |||||||||| |||| ||||||| ||||||||| Sbjct 11074 TAGGCCGTGAACGTTAATTTTTTCGGAATATAAGAACGACCGAATGATTCAAAAGTGCGC 11133 Query 4778 ACTGTGTCGGCCGTATCACCTAATCAGTTTTCATAGCATTGATCCAATTGTAAAAAGCCT 4837 || | |||| ||||||||| ||||||||||||||||| | ||||||||||||| |||||| Sbjct 11134 ACCGAGTCGCCCGTATCACATAATCAGTTTTCATAGCGTCGATCCAATTGTAACAAGCCT 11193 Query 4838 GCTTGCTCATGCTTACAAGCAGGAACTTAAAACTTACTTTTCCTCACGTAGTGCATGTAG 4897 || ||||| || | ||| ||||| | |||||||| |||| ||||||||| | |||| | Sbjct 11194 GCCTGCTCTTGTTCACATGCAGGCATTTAAAACTAACTTATCCTCACGTCATACATGCGG 11253 Query 4898 TTGGTTCGTTACTTCAGTAGTGACAATTTCACGACCCCACCGAAGCTATACACTTTTGTG 4957 ||||||||||| |||||| || | || ||||||||||||||||||||||| | ||||| Sbjct 11254 CGGGTTCGTTACTCCAGTAGAGAAACTTCCACGACCCCACCGAAGCTATACAGTGTTGTG 11313 Query 4958 AATATGCAAGTTGGTCTGCACGTGTGTTCAAATCGTAACGAAACAAAAGTGTGAACGGCT 5017 |||||||| | Sbjct 11314 GGAATGCAAGT------------------------------------------------T 11325 Query 5018 CTTACGAACATACTTGTTGCGGGTATGTCTAGTCCCTCTGAGTTCGAGAGTGATGCAGAA 5077 |||| ||||||||| ||| | ||| ||||||||| |||| ||| |||||||| ||||| Sbjct 11326 CTTAGGAACATACTCGTTCCCGGTTTGTCTAGTCTCTCTCGTTTCAAGAGTGATACAGAA 11385 Query 5078 TGAAGTTCATAGCGTGAACGTCACGTCACCA 5108 |||||||||||||||||||||||||| |||| Sbjct 11386 TGAAGTTCATAGCGTGAACGTCACGTTACCA 11416 Score = 215 bits (238), Expect = 2e-52 Identities = 341/494 (69%), Gaps = 52/494 (11%) Strand=Plus/Plus Query 4 GGGTGTT-TTCAAACTCTACGGCATGCATATCGGGACATGACTACGGCCAATATAACTGG 62 ||| ||| || ||| | || | |||||||| ||||||||||||||||| |||| || | Sbjct 11420 GGGCGTTCTTAAAATTTTATGACATGCATAGCGGGACATGACTACGGCGAATACGGCTAG 11479 Query 63 ACCACACCGCTTGCAAGCCATATGCATATAACGTCCATACTCGACGTCTACCCGTCAAGA 122 ||||||| || | |||| || |||||| ||||||||||| ||||||||| |||||||| Sbjct 11480 ACCACACGGCATAGAAGCTATGCGCATATGACGTCCATACTAGACGTCTACACGTCAAGA 11539 Query 123 GGCCCCTGCGCGACAGTTTCGAACCTGAATGTT-aaaaaaaaGTTGTATGAGTTTAGTGT 181 | ||| ||| | ||||||| ||| ||||| ||||||||| ||||||||||||||| Sbjct 11540 AACGTCTGGGCGGCTGTTTCGACGCTGCATGTTAAAAAAAAAGCCGTATGAGTTTAGTGT 11599 Query 182 TTAAACGTTTCTGTATTTTATCATTGGCTCTTTGCATAATGNNNNNNNNNNNNNNNNNCA 241 |||||| |||||| |||||||| || ||||| |||| | Sbjct 11600 CACCACGTTTTTGTATTGTATCATTGACTTCTTGCAAAATG---------CCGAAATGCG 11650 Query 242 CGTCGTCCGCACGTGAATAACAATGCAAATCCAAGGTGAA---------CATA---TTAA 289 |||||||||||||||||||| ||||||||| |||||| || |||| | || Sbjct 11651 CGTCGTCCGCACGTGAATAAGAATGCAAATGCAAGGTCAAAAATATGCGCATAATGTAAA 11710 Query 290 ACATATTGTGCCGATCCCACA-----------GTTGGGTGTTTGCGTGTAGCGATAATAT 338 |||||||| | | |||| ||| ||| | | | ||| |||||| ||| Sbjct 11711 ACATATTGCGTCAATCCGACAATGATGCTGACATTGTGCGGTAACGTATAGCGACGATAA 11770 Query 339 CATAAATATAGAACCTAACTCAAGCGTAGGATGATATCTGAGGTCAGTAGTTGCTTTGAA 398 ||| || || | |||||||| || | |||| || || |||||| Sbjct 11771 CATTAACATTCATTTTAACTCAAACG-----CGTTATC--------ATATTTAATTTGAA 11817 Query 399 CGTCGAGCGTGTAGGACGCGCTCACAACTTCGCGCCGTTTTAGCAGAAACCAAAGTT--- 455 | || | || || |||| ||||||| | ||| |||| || | |||| |||||||| Sbjct 11818 CATCTAACGAGTGGGACACGCTCACTGTTGCGCACCGTCTTCGTAGAAGCCAAAGTTCAC 11877 Query 456 --TCGCGTATCATC 467 || ||||||||| Sbjct 11878 TATCTCGTATCATC 11891 Score = 167 bits (184), Expect = 8e-38 Identities = 238/332 (72%), Gaps = 16/332 (5%) Strand=Plus/Plus Query 2269 GATTAATACGCGTCATGACTATATATAGAGAAACCGATAGCTTTA--ATTGACTAATATC 2326 |||| ||| | |||||||| || ||| ||||| ||||| || ||||||| || | Sbjct 11900 GATTGATAAGTGTCATGACCATGAATATGGAAACTGATAGTGTTGCGATTGACTCGTACC 11959 Query 2327 CGGAAAACGCTTGAACCTGTAGAACTCATTCGACCATCGCGCTGTACGCTAGTTTTTTCC 2386 | ||||| || | || ||||| ||| |||| |||| |||| |||||||||||| | Sbjct 11960 TTGTTAACGCATGGAACTACAGAACGTATTTGACCGTCGCCCTGTTCGCTAGTTTTTTGC 12019 Query 2387 TCCTGTTGTAAAGTGCGCGTTTCCTCGTAAAATTACAATGAATTCAAAAGCAAATAAAGT 2446 | |||| ||||| || ||||||| | ||||||||||||||| ||| ||||| || Sbjct 12020 GCGTGTTACAAAGTCCGTATTTCCTCCT--AATTACAATGAATTCGAAAAAGAATAACGT 12077 Query 2447 G--GTCAAGAGACGCCGCCACGTTTCCAGAAGTACGTCTGCACCAGCATCACCACTCTTG 2504 | ||||| | || || || || ||| | | ||| | ||| | |||| Sbjct 12078 GGCGTCAAAACGCGGCGGCATCATTGAAGA--GAGGACTGGATCAGAACTACCA------ 12129 Query 2505 ACGCCAAAGAGAATTACTTTTCCGTTGGAGATGATTCTTTACATGGCCAACTTCATGTGC 2564 | || || |||| ||||||||||||| | | | || ||||||| ||| |||||| | Sbjct 12130 --GTCACAGCCAATTGCTTTTCCGTTGGATACGGTCCTCTACATGGGCAAGTTCATGGAC 12187 Query 2565 TTCCAAGACTACAGAAGGTTTATTCTGTCTCT 2596 ||||||||||| | |||||||||||||||||| Sbjct 12188 TTCCAAGACTATAAAAGGTTTATTCTGTCTCT 12219 Score = 132 bits (146), Expect = 2e-27 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 2691 ATGGTCATCGAGTACAACTTCGACCCCTCGAGAATAAGAGAAGATCGCATACTAATGAAT 2750 || || |||||||||||||||||||| || ||| |||||||| ||| |||| ||||| Sbjct 12273 ATCGTGATCGAGTACAACTTCGACCCTTCAAGACTAAGAGAATATCAGGTACTGATGAAC 12332 Query 2751 GTCGAAACTTTGTCGCCTATTTTTGGCAGAATCGTGTCTCCAACCATaaaaaaaTTCACA 2810 ||| | ||||||||||||||||||| ||||||| ||||||||||| ||| ||||| || Sbjct 12333 GTCAATTATTTGTCGCCTATTTTTGGCGGAATCGTATCTCCAACCATGAAAGAATTCGCA 12392 Query 2811 GGGGTTTC 2818 |||||| Sbjct 12393 ACGGTTTC 12400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16232796918735