Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_009001.1 Length=4461 Score E Sequences producing significant alignments: (Bits) Value seq3835 695 0.0 >seq3835 Length=178785 Score = 695 bits (770), Expect = 0.0 Identities = 774/1027 (75%), Gaps = 41/1027 (4%) Strand=Plus/Plus Query 2 AAGAAATATTTTACTTTGACATGAAAAAA-GTTTGTTATGCTACATGAAATATTGAGATG 60 ||||||| ||||||||| |||| |||||| |||||||||| |||||| | |||||| ||| Sbjct 1961 AAGAAATGTTTTACTTTTACATAAAAAAAAGTTTGTTATGTTACATGGAGTATTGAAATG 2020 Query 61 GAAACACTAACCGGTGTAAATAGTATCGTTGTTGCTCCTGGTGCTCTGAATCCCTGAGGG 120 |||||||| ||| || ||| | | ||| ||| ||| ||||||||||| || || ||||| Sbjct 2021 GAAACACTGACCAGTATAATTGTTCTCGATGTCGCTTCTGGTGCTCTGCATTCCCGAGGG 2080 Query 121 ATTAGTTCCAATCCTTTG-TGCATTTACAAAGTTCGTTGGAAGCGGTTCCTTCGCGGGTG 179 | || |||| || |||| | | ||| || | | || ||||| || || | ||| Sbjct 2081 AATACTTCCG-TCTTTTGGTCCTTTTTTTAAATCCTTTTGAAGCCCGCTCTCCGGGAGTG 2139 Query 180 CCTGTAATGATCATAGaaaaaaaTGTGA-TACTTATGCTACAGTTTTACGGTTAAACTTT 238 |||||||| || | ||||| ||| ||| | |||||||||||||||||| ||| | ||| Sbjct 2140 CCTGTAATAATTAAAGAAATAAAATTGAATGCTTATGCTACAGTTTTACTGTTGAGCTTG 2199 Query 239 ATACTCATTAGAAGAGTACAATGACGATTTACCAAGTCCCCCTTTGTGGTATGTAGGATT 298 | || ||||||| || ||||||||| || | | || ||||||||| ||| Sbjct 2200 A----------AAAAGTACAACGAACATTTACCAACTCTTCATCTGCGGTATGTAGAATT 2249 Query 299 GCTTCTTTGACTTCATCTTCGTCGGTATAGTCCGAAAGAGCTAAAACTCTTTGGTCCCGC 358 ||| |||||| || | |||||| |||| | | | |||| |||| ||||| ||||| Sbjct 2250 TCTTTTTTGACGTCGTGATCGTCGCTATATTTCAAGAGAGATAAAT-TCTTTTCTCCCGA 2308 Query 359 AAGCTCAATTCCCGAGGAAGCAAACGAGGCTTCTTATTCATAGCTTGGAATTGATTGATC 418 | | |||||| || || ||||| ||| | ||| ||| || | | ||||| ||| Sbjct 2309 ACGTTCAATTTATGAAGACGCAAATGAGACCTCTCATTGGAAGTTCCAACTTGATGGATA 2368 Query 419 TTCCGTAATCTACGCATCACGCCTTTCCTCTGACTGTACCACGCCTGTAATATTTCATAG 478 ||| || | || ||| | | | |||||||| ||||||| |||||||||||| |||| Sbjct 2369 TTCTTTATTTTATGCACCGCTGCGTTCCTCTGGTCGTACCACACCTGTAATATTTTATAG 2428 Query 479 AAGTTGACGATTAAAAGTAGCAAAGCGTTCAGGGTACAAGTGTCATGTATGACAAATAAT 538 ||| |||| || || | | |||| | ||| ||||||||| || |||||||||||| || Sbjct 2429 AAGGTGACCATCGGAAATTGTAAAGTGGTCAAGGTACAAGTTTCTTGTATGACAAATGAT 2488 Query 539 TTTAGCAAAGAATAAATTTACTGATCAACTTACAGTCCTCCACGTTTTCGCATCTTTGGG 598 |||| | |||||||||||||||||| |||| || | |||| | || | ||||||||| Sbjct 2489 TTTACCGAAGAATAAATTTACTGATAAACTCACGTTTTTCCATTTCTTGGTATCTTTGGG 2548 Query 599 TGCACTGTTCTTCCACAATGCGTTTAATTCTTCTGCCAACTGCTCCCATGAAGCTGAGGG 658 ||||| ||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 2549 TGCACCGTTTTTCCACAACGCGTTCAATTCTTCTGCCAACTGCTCCCACGAAGCTGAGGG 2608 Query 659 ATCGTACGAAGCGTTCGGCTTTTGGAATTTCTTCACGGCAAGATGAGGATTCCGCTCGAG 718 ||||| |||| | |||| || | |||||| ||| ||||| ||||||||||| ||||| Sbjct 2609 ATCGTGCGAACTGCCCGGCGTTCGAAATTTCCTCAGGGCAATGTGAGGATTCCGTTCGAG 2668 Query 719 GTAGGCGA-----TCATATGTTCTAGTTGGTACGGAGTCGCAGGAGCGTGTCCCTTTACC 773 |||||||| | ||||| | ||||| |||||||||||||||| || |||||||| Sbjct 2669 GTAGGCGATGCAGTTATATGATGCAGTTGATACGGAGTCGCAGGAGATTGCGCCTTTACC 2728 Query 774 AATTTTGGTCTATGTTCATTTCTGTGAATAAAAAATTGA-----------AACCAGAGTT 822 | ||| | |||||| ||||||| |||||||| | || ||||||| Sbjct 2729 GGGCTCCGTCCAGATTCATTCCTGTGAA-AAAAAATTCAGAATAAAATTCAAACAGAGTT 2787 Query 823 AAACAGTTGTTCGATGTAAGAGAATTTGTTTTCAGAAGATGATTCGGTACTTTGTCCGAC 882 ||| ||||||| |||||||| |||| | ||| |||| |||||| ||||||| ||||| Sbjct 2788 AAAAAGTTGTTTGATGTAAGGGAATGCATCTTCCGAAG-TGATTCTCTACTTTGCCCGAC 2846 Query 883 GGATGC---CAGGGTCCGGCCGTGTAGAGGTGATAAGCTGTGCCGAGCGTGATAGTCATA 939 | ||| ||||| || || |||| |||||||| ||||||||| | |||||| Sbjct 2847 GAGTGCCAGCAGGGCCCAGCGATGTACAGGTGATA-----GGCCGAGCGTCAGAGTCATG 2901 Query 940 GCTTATCAGGATTTTCGGTTCAGCGGTCACTACAATTTTTTCCGAATCAACACGATGCTG 999 ||| || ||| |||||||||||||| || | ||||| ||||||||||| ||||||||||| Sbjct 2902 GCTCATTAGGGTTTTCGGTTCAGCGTTCGCCACAATCTTTTCCGAATCGACACGATGCTG 2961 Query 1000 GTGGATC 1006 ||| ||| Sbjct 2962 GTGAATC 2968 Score = 343 bits (380), Expect = 4e-91 Identities = 393/531 (74%), Gaps = 24/531 (5%) Strand=Plus/Plus Query 3389 CTCACGGCTCTTTGCGACTTTCTTAATCATTCTCGGACAACTGGTGCACGGTTCGTCTTG 3448 || ||| |||||||||||||| |||| ||||||||| || | |||||||| | || Sbjct 1172 CTTACGATTCTTTGCGACTTTCGGAATCTTTCTCGGACGACCGTAGCACGGTTGTTGATG 1231 Query 3449 CAAGTTTTCTCCCACGCTTGATGTCTTCGATTCTCGAGACTCTTGTGCTGCAGGAGTTGA 3508 ||| |||| || | |||||||| || || |||| | |||| ||| | |||| ||| || Sbjct 1232 CAACTTTTGTCTCGAGCTTGATGGCTCCGGTTCTGGTGACTTTTGAACAGCAGAAGTCGA 1291 Query 3509 GTTTTGAGAGGCCAATGGAGGAGTCGGTTCAGGTAAAGCAGCTGCTACATTCACAGGCGC 3568 | |||| || ||| ||| | || | || || |||||||||| ||||||||| ||| Sbjct 1292 TTCTTGAAAGCTCAAAGGACAACCGGGCTTAGCTACAGCAGCTGCTTCATTCACAGCCGC 1351 Query 3569 TGCACATGACGATTCTTCTTGATTCGGAGATGGAGAACGTTCTGCAGAAGTGGCTGCTTC 3628 || ||| || ||||||||||||| | ||||| |||| ||||||| ||||||| ||||||| Sbjct 1352 TGTACACGATGATTCTTCTTGATGCAGAGATTGAGAGCGTTCTGAAGAAGTGCCTGCTTC 1411 Query 3629 TCTTATTGTGCGTGCAGGGGATGGATTCTGTTCCTTTGGAGGAAGAGGTTCTGGGGTCGA 3688 | ||| || ||||||| ||||||| ||||||||||||||| ||||||||||| || Sbjct 1412 TATTACCGTAGGTGCAGGCCATGGATTTCTTTCCTTTGGAGGAAGTGGTTCTGGGGTTGA 1471 Query 3689 GTCAGTATTTTCCACAGGTCCATATTGTAAATTTTGTTGTTTTGGAAAAAGATGTTCCAG 3748 |||||||| |||||||||| |||| ||| |||||||| |||| || ||||| ||| ||| Sbjct 1472 GTCAGTATGTTCCACAGGTTCATACTGTGAATTTTGTACTTTTAGAGAAAGAGGTTTCAG 1531 Query 3749 GGTAACGGGTTCTGTCGCTTTCGGAGCTGTAGACTTGCAATCTCGTTTGTTCCGTTCTAT 3808 || ||||||||||| || ||| |||||| | | || Sbjct 1532 GGCCACGGGTTCTGT--------------TACTCTT------TCGTTTTT----GGCCAT 1567 Query 3809 GGCGTCTAGAGCGGCATCTAATGAATTTCCGGTCGATCGATAACGAAGTTTCGAGGCAGG 3868 |||||| | || |||| ||||||||||| |||| | || ||| ||||||||||||||| Sbjct 1568 GGCGTCCAACGCTGCATTCAATGAATTTCCTGTCGTTTGAAAACTAAGTTTCGAGGCAGG 1627 Query 3869 GTATGTATCTCCCACCGGTGCCCACGATGTTCTCCTCTCAGTAAGGAGCAG 3919 | |||| |||| | || ||| | |||| || ||| | |||||| || Sbjct 1628 GCCTGTACCTCCTATCGCTGCGGAAGATGAACTTCTCGTACGAAGGAGAAG 1678 Score = 188 bits (208), Expect = 2e-44 Identities = 292/409 (71%), Gaps = 16/409 (4%) Strand=Plus/Plus Query 1118 TGACGAAGAGGAAGCATCCATTTTATTCGTTACACGGTTTCGGGTGTTGGACACGTTGTG 1177 |||||||||| | ||| ||||||||||||| |||||||| | || ||||||||||||| Sbjct 2980 TGACGAAGAGCGAACATTCATTTTATTCGTTGCACGGTTTTGCGTCGTGGACACGTTGTG 3039 Query 1178 TACGCTGTGATGCTAGATATAAACTGGGCGGTTTTAATTGTCGATGTT--GTTATTCCCG 1235 |||| || |||||| | || |||||| || || || || |||| ||| |||| Sbjct 3040 TACGTTGGAATGCTACAAATTAACTGGCCGTTTCGAACCATCAGTGTTATGTTGTTCCTA 3099 Query 1236 ATTAGGACAAGCCAATAAACAATGAGCATGTGTCCGTCACGTGACCTTAAACTGATAATA 1295 ||| ||||||||||| |||| | || | ||| ||| ||||| || |||| || || Sbjct 3100 ATTTTGACAAGCCAATGAACACTCAGTTTATGTGCGTAACGTGGCCGCAAACCAATTGTA 3159 Query 1296 ATTGACC-CTAGAAAAACCAATCGTTTAAACATGTGGAGGAATTCTGTGAACGATGACGC 1354 ||||| | || || | || ||||| | || | |||||| ||| |||| | Sbjct 3160 GGTGACCTCAAGCAATAAACAT-GTTTACTTACATGAAAGAATTCCAGGAAATATGATGT 3218 Query 1355 AATGCTCCTGATAACAACTGGGTTTTTTAGTTACTCGGGTCGCTTTCCGTTGTTATCACT 1414 | ||| |||| ||| ||| || | || ||||| |||| ||| | ||| || Sbjct 3219 AGCGCTGCTGA---CAATTGGATTAACTTGTCACTCGTACCGCT---CGT-GCTATGTCT 3271 Query 1415 CTTTTACTGTTAT-TATTAATATTATTCAGACATTACGGAAACGCTTGCATATTTTTCTA 1473 | || |||| ||||||||||||| ||| |||| ||||| | | ||||||| ||| Sbjct 3272 CATTC----TTATGTATTAATATTATTTAGATATTAGAGAAACCCGTACATATTTCACTA 3327 Query 1474 CCAAGAGAGTGCCTCGCAGACATGGAACAAAATACCATAGACAACCCAA 1522 |||| || | || ||| |||||||||| |||||||| ||||||||| || Sbjct 3328 CCAAAAGGGAGCTTCGTAGACATGGAATAAAATACCGTAGACAACCAAA 3376 Score = 109 bits (120), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 4298 TCTCTGGCTCAGAGATTCACAGGGATTAGGTAGAAGATCTGCAACTTCTGATGTTGAAAG 4357 || || |||| |||||| || || || |||||| | || ||||||| ||| |||||| Sbjct 1796 TCGCTTGCTCGGAGATTTACGGGTATCGGGTAGATTAGCTTCAACTTCCAATGGTGAAAG 1855 Query 4358 TGGCACTAGTTGCACTCTCGGCGACCTTC--CCAGCATGACCACATCGATCTCGGTATTC 4415 ||||||||| | || ||||| | ||| |||||||| | | | |||||| ||| Sbjct 1856 TGGCACTAGCCCCGCTGTCGGC--CATTCGTTCAGCATGATGCTACCCAACTCGGTGTTC 1913 Query 4416 TCGAACCCTTGCAGAACTTCCATCAACTGCTCATCTGCATATCAAA 4461 |||||||||| ||||| ||| | ||||| || |||||| ||||||| Sbjct 1914 TCGAACCCTTCCAGAATTTCGAGCAACTCCTGATCTGCTTATCAAA 1959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14162499342070