Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_009002.1
Length=4808
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 80.6 8e-12
seq1091 78.8 3e-11
seq203 78.8 3e-11
seq4069 77.0 1e-10
seq706 77.0 1e-10
>seq1094
Length=15287
Score = 80.6 bits (88), Expect = 8e-12
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 779 TTTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCG 838
||||| || ||||||||| | |||||||||||| |||||| ||||||| |||||| ||
Sbjct 4656 TTTTTGAAATCAGGAGACACAACTCTATCATGCATCGATGTTAACTCCTGAGCCGTTACG 4597
Query 839 CTCGACCCATCA 850
||||||| ||||
Sbjct 4596 CTCGACCTATCA 4585
>seq1091
Length=38165
Score = 78.8 bits (86), Expect = 3e-11
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 780 TTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCGC 839
|||| | ||||||||| | ||||||| |||| ||||||||||||||||||||| ||
Sbjct 1011 TTTTGATATCAGGAGACACAACTCTATCGTGCATCGATGTCAACTCCTAAGCCGTCACGG 1070
Query 840 TCGACCCATCA 850
|||||||||||
Sbjct 1071 TCGACCCATCA 1081
>seq203
Length=38526
Score = 78.8 bits (86), Expect = 3e-11
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 780 TTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCGC 839
|||| | ||||||||| | ||||||| |||| ||||||||||||||||||||| ||
Sbjct 37581 TTTTGATATCAGGAGACACAACTCTATCGTGCATCGATGTCAACTCCTAAGCCGTCACGG 37640
Query 840 TCGACCCATCA 850
|||||||||||
Sbjct 37641 TCGACCCATCA 37651
>seq4069
Length=477175
Score = 77.0 bits (84), Expect = 1e-10
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 779 TTTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCG 838
||||| || ||||||||| | |||||||||||| |||| | ||||||||||| || ||
Sbjct 476438 TTTTTGAAATCAGGAGACACAACTCTATCATGCATCGATTTTAACTCCTAAGCTGTTTCG 476379
Query 839 CTCGACCCATCA 850
||||||| ||||
Sbjct 476378 CTCGACCTATCA 476367
>seq706
Length=18111
Score = 77.0 bits (84), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 775 ATATTTTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGT 834
||| |||| || ||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 4251 ATACTTTTGGAA-TCAGGAGACATAAATCTATCATGCAACGATGTCAACTCCTTAGCCGT 4309
Query 835 AGCGCTCGACCCAT 848
|||| |||||||
Sbjct 4310 TACGCTGGACCCAT 4323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15272844410235
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |