Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_009002.1 Length=4808 Score E Sequences producing significant alignments: (Bits) Value seq1094 80.6 8e-12 seq1091 78.8 3e-11 seq203 78.8 3e-11 seq4069 77.0 1e-10 seq706 77.0 1e-10 >seq1094 Length=15287 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 779 TTTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCG 838 ||||| || ||||||||| | |||||||||||| |||||| ||||||| |||||| || Sbjct 4656 TTTTTGAAATCAGGAGACACAACTCTATCATGCATCGATGTTAACTCCTGAGCCGTTACG 4597 Query 839 CTCGACCCATCA 850 ||||||| |||| Sbjct 4596 CTCGACCTATCA 4585 >seq1091 Length=38165 Score = 78.8 bits (86), Expect = 3e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 780 TTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCGC 839 |||| | ||||||||| | ||||||| |||| ||||||||||||||||||||| || Sbjct 1011 TTTTGATATCAGGAGACACAACTCTATCGTGCATCGATGTCAACTCCTAAGCCGTCACGG 1070 Query 840 TCGACCCATCA 850 ||||||||||| Sbjct 1071 TCGACCCATCA 1081 >seq203 Length=38526 Score = 78.8 bits (86), Expect = 3e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 780 TTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCGC 839 |||| | ||||||||| | ||||||| |||| ||||||||||||||||||||| || Sbjct 37581 TTTTGATATCAGGAGACACAACTCTATCGTGCATCGATGTCAACTCCTAAGCCGTCACGG 37640 Query 840 TCGACCCATCA 850 ||||||||||| Sbjct 37641 TCGACCCATCA 37651 >seq4069 Length=477175 Score = 77.0 bits (84), Expect = 1e-10 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 779 TTTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGTAGCG 838 ||||| || ||||||||| | |||||||||||| |||| | ||||||||||| || || Sbjct 476438 TTTTTGAAATCAGGAGACACAACTCTATCATGCATCGATTTTAACTCCTAAGCTGTTTCG 476379 Query 839 CTCGACCCATCA 850 ||||||| |||| Sbjct 476378 CTCGACCTATCA 476367 >seq706 Length=18111 Score = 77.0 bits (84), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 775 ATATTTTTTCAAGTCAGGAGACGAAGCTCTATCATGCAACGATGTCAACTCCTAAGCCGT 834 ||| |||| || ||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 4251 ATACTTTTGGAA-TCAGGAGACATAAATCTATCATGCAACGATGTCAACTCCTTAGCCGT 4309 Query 835 AGCGCTCGACCCAT 848 |||| ||||||| Sbjct 4310 TACGCTGGACCCAT 4323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15272844410235