Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_009003.1
Length=6145
Score E
Sequences producing significant alignments: (Bits) Value
seq4099 120 1e-23
seq1112 78.8 4e-11
>seq4099
Length=131579
Score = 120 bits (132), Expect = 1e-23
Identities = 97/118 (82%), Gaps = 11/118 (9%)
Strand=Plus/Minus
Query 6000 AACTTTTTACAGACTCAGATAAGAGCGACTCCTTGAGACTTTGTGT-GTAGTTGGAACGC 6058
|||||||| |||||| ||||||||||||||| |||||| | |||| ||||||||||| |
Sbjct 67313 AACTTTTTTGAGACTCGGATAAGAGCGACTCCGTGAGACATCGTGTAGTAGTTGGAACAC 67254
Query 6059 GTAACGGCGTACACTGTGTCGC----------TCTGTGTCGTAGTTGGAAAACCACTA 6106
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 67253 CCGACGGCGTACACTGTGTCGCACTGTGTCGCTCTGTGTCGTAGTTGGAAAACCACTA 67196
>seq1112
Length=1408995
Score = 78.8 bits (86), Expect = 4e-11
Identities = 66/80 (83%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 6029 TCCTTGAGACTTTGTGT-GTAGTTGGAACGCGTAACGGCGTACACTGTGTCGCTCTGTGT 6087
||| |||||| |||| ||||||||||| | | | |||| |||||||||||||||||
Sbjct 1296105 TCCGTGAGACACCGTGTAGTAGTTGGAACACCCGATGCCGTAAACTGTGTCGCTCTGTGT 1296046
Query 6088 CGTAGTTGGAAAACCACTAT 6107
|| |||||||||||| ||||
Sbjct 1296045 CGCAGTTGGAAAACCCCTAT 1296026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19547805283748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |