Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_009003.1 Length=6145 Score E Sequences producing significant alignments: (Bits) Value seq4099 120 1e-23 seq1112 78.8 4e-11 >seq4099 Length=131579 Score = 120 bits (132), Expect = 1e-23 Identities = 97/118 (82%), Gaps = 11/118 (9%) Strand=Plus/Minus Query 6000 AACTTTTTACAGACTCAGATAAGAGCGACTCCTTGAGACTTTGTGT-GTAGTTGGAACGC 6058 |||||||| |||||| ||||||||||||||| |||||| | |||| ||||||||||| | Sbjct 67313 AACTTTTTTGAGACTCGGATAAGAGCGACTCCGTGAGACATCGTGTAGTAGTTGGAACAC 67254 Query 6059 GTAACGGCGTACACTGTGTCGC----------TCTGTGTCGTAGTTGGAAAACCACTA 6106 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 67253 CCGACGGCGTACACTGTGTCGCACTGTGTCGCTCTGTGTCGTAGTTGGAAAACCACTA 67196 >seq1112 Length=1408995 Score = 78.8 bits (86), Expect = 4e-11 Identities = 66/80 (83%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 6029 TCCTTGAGACTTTGTGT-GTAGTTGGAACGCGTAACGGCGTACACTGTGTCGCTCTGTGT 6087 ||| |||||| |||| ||||||||||| | | | |||| ||||||||||||||||| Sbjct 1296105 TCCGTGAGACACCGTGTAGTAGTTGGAACACCCGATGCCGTAAACTGTGTCGCTCTGTGT 1296046 Query 6088 CGTAGTTGGAAAACCACTAT 6107 || |||||||||||| |||| Sbjct 1296045 CGCAGTTGGAAAACCCCTAT 1296026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19547805283748