Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3112 84.2 2e-11 >seq3112 Length=543522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 || || ||||| || | ||||||||| | || ||||| |||||||||||||| |||| Sbjct 484203 CCTGTGACATGGGCCAACATATAAGTGAGTAGAGAATAACTGGCAATGTTAAAGGGAATA 484262 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 |||| |||||| || || || ||| |||| ||| || | || || | || || Sbjct 484263 CCCAGACCCATATCCCCGCTCCGCTGGTACAATAAACACGATAATTCGCCATTAGACACG 484322 Query 20360 TAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 || || || || |||| || || || || | ||||| | | | ||| | || || Sbjct 484323 TACAACTGAACCAGACAA-TGGCAAGGTGGTAAAGCCATTATTGGGATATCCACTGGATT 484381 Query 20419 CCACGCACACATAATGATTC 20438 ||| |||||||| ||||||| Sbjct 484382 CCAGGCACACATTATGATTC 484401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441347845885320