Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq429 104 2e-17
seq1719 96.9 3e-15
seq2660 95.1 1e-14
seq1477 95.1 1e-14
>seq429
Length=39415
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 8336 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 8277
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||| ||||||| || ||||||||||| ||| || |||||
Sbjct 8276 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 8237
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 8336 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 8277
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||| ||||||| || ||||||||||| ||| || |||||
Sbjct 8276 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 8237
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 27587 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 27528
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||| ||||||| || ||||||||||| ||| || |||||
Sbjct 27527 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 27488
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 27587 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 27528
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||| ||||||| || ||||||||||| ||| || |||||
Sbjct 27527 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 27488
Score = 86.0 bits (94), Expect = 5e-12
Identities = 81/100 (81%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586
||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 13542 CATGTATCAGCTCCAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 13483
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||| |||||| | ||||||||||| ||| || |||||
Sbjct 13482 CCATGACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 13443
Score = 86.0 bits (94), Expect = 5e-12
Identities = 81/100 (81%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389
||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 13542 CATGTATCAGCTCCAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 13483
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||| |||||| | ||||||||||| ||| || |||||
Sbjct 13482 CCATGACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 13443
Score = 82.4 bits (90), Expect = 6e-11
Identities = 76/94 (81%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 114342 GCTCTAGAATTACCACG-TTATCCAAGTAACTGAGT--AAGATCTAAGGAACCAAAACTG 114398
||||||||||||||||| |||||||||| | || || | ||||| || ||||| |||||
Sbjct 5461 GCTCTAGAATTACCACGGTTATCCAAGTGAATGTGTGTACGATCTGAGAAACCATAACTG 5520
Query 114399 ATATATTGAGCCATTCGTGGTATCGTCTTAAGTA 114432
|| | ||||||||||| ||| || ||| || ||
Sbjct 5521 ATTCAATGAGCCATTCGCGGTTTCATCTCAATTA 5554
Score = 82.4 bits (90), Expect = 6e-11
Identities = 76/94 (81%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 115539 GCTCTAGAATTACCACG-TTATCCAAGTAACTGAGT--AAGATCTAAGGAACCAAAACTG 115595
||||||||||||||||| |||||||||| | || || | ||||| || ||||| |||||
Sbjct 5461 GCTCTAGAATTACCACGGTTATCCAAGTGAATGTGTGTACGATCTGAGAAACCATAACTG 5520
Query 115596 ATATATTGAGCCATTCGTGGTATCGTCTTAAGTA 115629
|| | ||||||||||| ||| || ||| || ||
Sbjct 5521 ATTCAATGAGCCATTCGCGGTTTCATCTCAATTA 5554
>seq1719
Length=8586
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/99 (84%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAAC 115587
||||||| ||||||||||||| || ||||||||||||| || || | |||||||| |||
Sbjct 5452 ATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAAC 5393
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
|| ||||||| || ||||||||||| ||| || |||||
Sbjct 5392 CATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 5354
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/99 (84%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAAC 114390
||||||| ||||||||||||| || ||||||||||||| || || | |||||||| |||
Sbjct 5452 ATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAAC 5393
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
|| ||||||| || ||||||||||| ||| || |||||
Sbjct 5392 CATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 5354
>seq2660
Length=2805
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/99 (83%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA--GATCTAAGGAAC 115587
|||||| |||||||||||||||| ||||||||||||| || || | |||||||| |||
Sbjct 260 ATGTATWAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGAACGATCTAAGAAAC 201
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
|| ||||||| | ||||||||||| ||| || |||||
Sbjct 200 CATAACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 162
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/99 (83%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA--GATCTAAGGAAC 114390
|||||| |||||||||||||||| ||||||||||||| || || | |||||||| |||
Sbjct 260 ATGTATWAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGAACGATCTAAGAAAC 201
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
|| ||||||| | ||||||||||| ||| || |||||
Sbjct 200 CATAACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 162
>seq1477
Length=10423
Score = 95.1 bits (104), Expect = 1e-14
Identities = 83/100 (83%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389
||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 1085 CATGTATCAGCTCAAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 1144
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||| ||||||| || ||||||||||| ||| || |||||
Sbjct 1145 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1184
Score = 95.1 bits (104), Expect = 1e-14
Identities = 83/100 (83%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586
||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| ||
Sbjct 1085 CATGTATCAGCTCAAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 1144
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||| ||||||| || ||||||||||| ||| || |||||
Sbjct 1145 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397040512307446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |