Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq429 104 2e-17 seq1719 96.9 3e-15 seq2660 95.1 1e-14 seq1477 95.1 1e-14 >seq429 Length=39415 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || || | |||||||| || Sbjct 8336 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 8277 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 8276 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 8237 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || || | |||||||| || Sbjct 8336 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 8277 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 8276 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 8237 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || || | |||||||| || Sbjct 27587 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 27528 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 27527 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 27488 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || || | |||||||| || Sbjct 27587 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 27528 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 27527 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 27488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586 ||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| || Sbjct 13542 CATGTATCAGCTCCAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 13483 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| |||||| | ||||||||||| ||| || ||||| Sbjct 13482 CCATGACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 13443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389 ||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| || Sbjct 13542 CATGTATCAGCTCCAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 13483 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| |||||| | ||||||||||| ||| || ||||| Sbjct 13482 CCATGACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 13443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114342 GCTCTAGAATTACCACG-TTATCCAAGTAACTGAGT--AAGATCTAAGGAACCAAAACTG 114398 ||||||||||||||||| |||||||||| | || || | ||||| || ||||| ||||| Sbjct 5461 GCTCTAGAATTACCACGGTTATCCAAGTGAATGTGTGTACGATCTGAGAAACCATAACTG 5520 Query 114399 ATATATTGAGCCATTCGTGGTATCGTCTTAAGTA 114432 || | ||||||||||| ||| || ||| || || Sbjct 5521 ATTCAATGAGCCATTCGCGGTTTCATCTCAATTA 5554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115539 GCTCTAGAATTACCACG-TTATCCAAGTAACTGAGT--AAGATCTAAGGAACCAAAACTG 115595 ||||||||||||||||| |||||||||| | || || | ||||| || ||||| ||||| Sbjct 5461 GCTCTAGAATTACCACGGTTATCCAAGTGAATGTGTGTACGATCTGAGAAACCATAACTG 5520 Query 115596 ATATATTGAGCCATTCGTGGTATCGTCTTAAGTA 115629 || | ||||||||||| ||| || ||| || || Sbjct 5521 ATTCAATGAGCCATTCGCGGTTTCATCTCAATTA 5554 >seq1719 Length=8586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAAC 115587 ||||||| ||||||||||||| || ||||||||||||| || || | |||||||| ||| Sbjct 5452 ATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAAC 5393 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| || ||||||||||| ||| || ||||| Sbjct 5392 CATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 5354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAAC 114390 ||||||| ||||||||||||| || ||||||||||||| || || | |||||||| ||| Sbjct 5452 ATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAAC 5393 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| || ||||||||||| ||| || ||||| Sbjct 5392 CATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 5354 >seq2660 Length=2805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/99 (83%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA--GATCTAAGGAAC 115587 |||||| |||||||||||||||| ||||||||||||| || || | |||||||| ||| Sbjct 260 ATGTATWAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGAACGATCTAAGAAAC 201 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| | ||||||||||| ||| || ||||| Sbjct 200 CATAACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/99 (83%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA--GATCTAAGGAAC 114390 |||||| |||||||||||||||| ||||||||||||| || || | |||||||| ||| Sbjct 260 ATGTATWAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTGAACGATCTAAGAAAC 201 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| | ||||||||||| ||| || ||||| Sbjct 200 CATAACTGATTTGATGAGCCATTCGCGGTTTCACCTTAA 162 >seq1477 Length=10423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389 ||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| || Sbjct 1085 CATGTATCAGCTCAAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 1144 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 1145 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1184 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586 ||||||| |||| ||||||||||| ||||||||||||| || || | |||||||| || Sbjct 1085 CATGTATCAGCTCAAGAATTACCACAGTTATCCAAGTAAATGTGTGTACGATCTAAGAAA 1144 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 1145 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397040512307446