Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 152 1e-31
seq4480 123 6e-23
seq2212 123 6e-23
seq713 93.3 1e-13
>seq3846
Length=171336
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| ||||| || | ||| || ||||| | ||| ||| |||||||| ||||| ||||
Sbjct 16796 CCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAA 16855
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | ||||||||||| ||||||| | ||| || |||
Sbjct 16856 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGA 16915
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| ||||| ||||| || || || ||||| ||||| || | ||| | ||| |||
Sbjct 16916 ATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACT 16975
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| |||||||| |||| |||||||| || ||||||||
Sbjct 16976 TCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCAT 17022
Score = 120 bits (132), Expect = 7e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || |||| || || | |||| || |||||| |||||||| ||||| |
Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGAT 15943
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
| || ||||||||||| | || || || || ||||||| |||||| || |||
Sbjct 15944 AAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTG---GTCTGGA 16000
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || || || || |||||||| || || ||||| |||| ||| | ||
Sbjct 16001 GGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCA 16060
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | |||||| || || || || |||||||| ||||| || ||||||
Sbjct 16061 ACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111
Score = 120 bits (132), Expect = 7e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | |||| ||| || | ||| | ||| ||||||||| ||||| ||||| |
Sbjct 16111 TCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGA 16170
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363
| || ||||||||||| | || || || ||||| |||| |||||| || ||||
Sbjct 16171 CAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTG---ATCTGG 16227
Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| ||||| ||||| || || || || || || || ||||| |||| ||| | ||
Sbjct 16228 AGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTC 16287
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | |||||| || || || || || |||||||| || || |||||
Sbjct 16288 GACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || |||| || || ||||||| ||| || ||||| |||||||||||||
Sbjct 15200 CCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAA 15259
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | |||||||| || || || | | ||| || ||||
Sbjct 15260 AGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGG 15319
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || || || ||||| ||||||||||| ||||| | ||| | || |||
Sbjct 15320 ATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACT 15379
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || ||||| || || ||||| ||||| || || |||||
Sbjct 15380 TCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | ||| || ||||||| || |||||| ||||| || || || |
Sbjct 16340 CCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAA 16399
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || || || || | ||||| || || ||||||| | ||| || ||||
Sbjct 16400 AGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 16459
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || || || |||||||| ||||||||||| || | || | ||||||
Sbjct 16460 ATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACT 16519
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || || || || | ||||||||||| ||||||||
Sbjct 16520 TCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || || || | ||| |||||||||||| || ||||| |
Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || ||||| | ||||||||| || ||||||| |||||| || |||
Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTG---GTCTGGA 15772
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| ||||| ||||| ||||| || ||||| || || |||| || | ||
Sbjct 15773 GGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCA 15832
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| ||||| || || | || ||||| || || |||||
Sbjct 15833 ACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 102 bits (112), Expect = 2e-16
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| ||||| | ||| || ||||||| || || || || || || ||||| |
Sbjct 14971 TCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 15030
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || || || ||||| | ||||| |||||||| || | | ||| || |||||
Sbjct 15031 AAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGG---TCTGG 15087
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||||||||||| || |||||||| || || || ||||| || | || || ||
Sbjct 15088 AGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTC 15147
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| || || ||||||| || ||||| || ||||||||
Sbjct 15148 AACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
>seq4480
Length=409792
Score = 123 bits (136), Expect = 6e-23
Identities = 145/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||| | || || || || || || | |||||| || || |||||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 288346 AGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || ||||| |||||| ||||| ||||||||||| || || || |||
Sbjct 402801 AGTCGCTGCTGG---TCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTT 402745
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | |||| || || || || || ||||| ||||| || ||||| ||||| |||
Sbjct 402744 TCGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACG 402685
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 402684 AAGATCTGCATTGTG 402670
>seq2212
Length=252600
Score = 123 bits (136), Expect = 6e-23
Identities = 145/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||| | || || || || || || | |||||| || || |||||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 288346 AGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || ||||| |||||| ||||| ||||||||||| || || || |||
Sbjct 250351 AGTCGCTGCTGG---TCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTT 250407
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | |||| || || || || || ||||| ||||| || ||||| ||||| |||
Sbjct 250408 TCGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACG 250467
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 250468 AAGATCTGCATTGTG 250482
>seq713
Length=327371
Score = 93.3 bits (102), Expect = 1e-13
Identities = 89/113 (79%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||||||||| || ||||| |||||||| ||||| || | ||| | ||| || ||
Sbjct 311041 CCTTCTTTATCTTGTATTTTTGCTTTCACATTTTCAATCGTGTCGGAGGCTTCCACCTCC 310982
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT-GTTAT 288481
| ||||| |||||||| || | ||| ||||||||||||||||| || |||||
Sbjct 310981 AATGTGATTGTCTTCCCAGTTAAAGTTTTGACGAATATCTGCATGATGGTTAT 310929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179586037921594
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