Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 116 4e-21
seq4491 100 3e-16
seq4302 100 3e-16
seq1113 100 3e-16
seq968 100 3e-16
seq4103 98.7 1e-15
seq4480 96.9 4e-15
seq2212 96.9 4e-15
>seq3846
Length=171336
Score = 116 bits (128), Expect = 4e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 41997 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 42056
|| |||| ||| || || ||||||||||| ||||| |||| || || || | ||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502
Query 42057 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116
|| |||||||| ||||| || ||||||||||| ||||| | ||| | || || |||||
Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562
Query 42117 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176
||||||| ||| | || | | |||||| | || || || | || ||||||
Sbjct 15563 TGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTT 15622
Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || || ||||| ||||| ||||||||
Sbjct 15623 TTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | || | || ||||| || ||| || |||||||||||||| || | |
Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| ||| || |||| || |||||||| || ||||| || | |||||||| || | ||
Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||| |||| | ||| | |||| || | | | | |||||| | || ||
Sbjct 16232 ATTCCCTCTTTGT-CTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGAC 16290
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 16291 TTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|| || || |||||||| || | | ||||| |||| || |||||||| ||||| ||
Sbjct 15920 TCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAG 15979
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | ||||||||||| | || | | |||||||| | ||| |||| | || | |
Sbjct 15980 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGT-CTTGAATTTTCGCCTTTACATT 16038
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| | || || || | ||||||||||||||| || || ||||| ||
Sbjct 16039 TTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAAC 16098
Query 42197 AAAGATTTGCATT 42209
|| |||||||||
Sbjct 16099 GAAAATTTGCATT 16111
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||||||||| || || | ||||| ||| | || || ||||| || ||||| ||
Sbjct 15235 CTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAA 15294
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| | || ||||||||| | ||| | | |||||||| | ||| |||||| ||| |
Sbjct 15295 AATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGT-CTTGAATTTTTGCTTTCACGT 15353
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | || || | || || || | || || || || || || || || || |
Sbjct 15354 TCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGA 15413
Query 42196 CAAAGATTTGCAT 42208
|||| ||||||||
Sbjct 15414 CAAAAATTTGCAT 15426
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || || ||||| | ||||| || | || || ||||| || || || ||
Sbjct 16604 TCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAG 16663
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | || ||||||||| | ||| | | ||| |||||| ||| ||| ||| | |
Sbjct 16664 ATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTT 16723
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||| | || || || | |||||||||||||| |||| ||||| ||
Sbjct 16724 TCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACG 16783
Query 42198 AAGATTTGCAT 42208
||||| |||||
Sbjct 16784 AAGATCTGCAT 16794
>seq4491
Length=410418
Score = 100 bits (110), Expect = 3e-16
Identities = 73/84 (87%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|||||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||
Sbjct 202353 AAAAATTTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 202294
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||| ||||||||||||||||||||
Sbjct 202293 ACTTACCACTATACTACCGAGGAT 202270
>seq4302
Length=777177
Score = 100 bits (110), Expect = 3e-16
Identities = 76/87 (87%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056
||||||| || ||| |||| | |||||||||| ||||||||||||||||||||| |||
Sbjct 9446 AAAAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 9387
Query 57057 CTCACCACTATACTACCGAGGA-TTGA 57082
|| ||||||||||||||||||| ||||
Sbjct 9386 CTTACCACTATACTACCGAGGACTTGA 9360
>seq1113
Length=615210
Score = 100 bits (110), Expect = 3e-16
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct 409605 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 409664
Query 57058 TCACCACTATACTACCGAGGA-TTGAA 57083
| ||||||||||||||||||| |||||
Sbjct 409665 TTACCACTATACTACCGAGGACTTGAA 409691
>seq968
Length=309140
Score = 100 bits (110), Expect = 3e-16
Identities = 77/90 (86%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |
Sbjct 219672 ATAAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 219613
Query 57055 TACTCACCACTATACTACCGAGGA-TTGAA 57083
|||| ||||||||||||||||||| |||||
Sbjct 219612 TACTGACCACTATACTACCGAGGACTTGAA 219583
>seq4103
Length=484527
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |
Sbjct 381326 ATAAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 381385
Query 57055 TACTCACCACTATACTACCGAGGA 57078
|||| |||||||||||||||||||
Sbjct 381386 TACTTACCACTATACTACCGAGGA 381409
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct 380764 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 380823
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||||||||||
Sbjct 380824 TTACCACTATACTACCGAGGA 380844
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 376103 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 376162
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 376163 TACTACCGAGGA 376174
>seq4480
Length=409792
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || | || || || || || || || || |
Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
|||||||||||||||| | || | | ||| |||||| |||||| |||| |
Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | || ||| || ||||| || | |||||||| |||||||| || |||||||| |
Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684
Query 42199 AGATTTGCATT 42209
|||| ||||||
Sbjct 402683 AGATCTGCATT 402673
>seq2212
Length=252600
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || | || || || || || || || || |
Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
|||||||||||||||| | || | | ||| |||||| |||||| |||| |
Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | || ||| || ||||| || | |||||||| |||||||| || |||||||| |
Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468
Query 42199 AGATTTGCATT 42209
|||| ||||||
Sbjct 250469 AGATCTGCATT 250479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543182088106320
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