Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3846 145 8e-30 seq4480 118 1e-21 seq2212 118 1e-21 >seq3846 Length=171336 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| || | || ||||| | || ||||| |||||||||||||| || | Sbjct 15427 ACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGA 15486 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | |||||||||||||| || ||| | ||||| ||||| ||||| || || Sbjct 15487 CAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGG 15546 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| |||||| ||||| ||| | ||| || ||| || || Sbjct 15547 AATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGAC 15606 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||| ||||| || | ||| || || ||||||||||| Sbjct 15607 TTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| || || ||||| |||| | ||| || |||||||||||||| Sbjct 15908 TGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGC 15967 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | || | ||||||||||| ||||||||||| || || ||||| ||||| Sbjct 15968 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTC 16027 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||||| || | || || ||| || ||||| | || | ||| ||||| || Sbjct 16028 GCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTG 16087 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 16088 AGAGTCTTAACGAAAATTTGCATT 16111 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | || || ||| |||| ||| | || |||||||||||||| ||||| || | Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||||||||||||||||||||| |||| | |||||||| || |||||| Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| ||||| || ||| ||||||| || | || || ||| || ||| Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACT 16291 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| ||||| || | || || || || |||||||| Sbjct 16292 TCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || || ||||||||||| |||| | ||| ||| | || Sbjct 14986 AAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATC 15045 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||| || || || | || | || ||||||||| ||||||||||||||||| || Sbjct 15046 TTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTC 15105 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | ||| ||| || || || || | || | || Sbjct 15106 TTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGT 15165 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| ||||| || || || ||||| Sbjct 15166 TTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || || |||||||||| || || || |||||||| || || || | Sbjct 15199 ACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGA 15258 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | ||||| ||||| || || ||| |||| | | ||||||||| || || Sbjct 15259 AAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGG 15318 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||| || || ||||| |||||| ||||| || ||| | ||||||| || || | Sbjct 15319 GATTCCCTCCTTGTCTTGAATTTTT-GCTTTCACGTTCTCTATTGTATCAGATGCCTCGA 15377 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | ||||| || || | |||||| || ||||||||||| Sbjct 15378 CTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || || || | || ||||||||||| |||||||| || | Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| || || || || ||| | || | ||||||||||| |||||| Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || ||||| ||| ||| ||| | || || || || || Sbjct 15776 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACC 15835 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 15836 TCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || |||||||| || ||||||||||| | | || || | || Sbjct 16354 AAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATC 16413 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||| ||||||||| | || | || ||||||||| || || ||||| || || || Sbjct 16414 CTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTC 16473 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| || || | ||| || || || ||||| | || | || Sbjct 16474 TTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGT 16533 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || ||||| || ||||| Sbjct 16534 TTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 >seq4480 Length=409792 Score = 118 bits (130), Expect = 1e-21 Identities = 151/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 64243 AATCGTCGATTCTTTT-------TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAA 64295 |||| | ||||||||| || |||||||| |||| | || || | || || | Sbjct 402881 AATCATTGATTCTTTTACCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGA 402822 Query 64296 GCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTA 64355 | || ||||||||| | ||||| ||||||||||| ||||| ||||| ||||| || || | Sbjct 402821 GTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGA 402762 Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415 |||| ||| ||| || | ||||| || ||||| || | ||| | |||||||| Sbjct 402761 TTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGC 402702 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | |||| || |||||||| || |||||| Sbjct 402701 CCGTCAGGGTCTTTACGAAGATCTGCATT 402673 >seq2212 Length=252600 Score = 118 bits (130), Expect = 1e-21 Identities = 151/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 64243 AATCGTCGATTCTTTT-------TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAA 64295 |||| | ||||||||| || |||||||| |||| | || || | || || | Sbjct 250271 AATCATTGATTCTTTTACCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGA 250330 Query 64296 GCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTA 64355 | || ||||||||| | ||||| ||||||||||| ||||| ||||| ||||| || || | Sbjct 250331 GTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGA 250390 Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415 |||| ||| ||| || | ||||| || ||||| || | ||| | |||||||| Sbjct 250391 TTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGC 250450 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | |||| || |||||||| || |||||| Sbjct 250451 CCGTCAGGGTCTTTACGAAGATCTGCATT 250479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499616551332120