Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 145 8e-30
seq4480 118 1e-21
seq2212 118 1e-21
>seq3846
Length=171336
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| || | || ||||| | || ||||| |||||||||||||| || |
Sbjct 15427 ACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGA 15486
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || | |||||||||||||| || ||| | ||||| ||||| ||||| || ||
Sbjct 15487 CAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGG 15546
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| |||||||| ||||| |||||| ||||| ||| | ||| || ||| || ||
Sbjct 15547 AATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGAC 15606
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | || | ||| ||||| || | ||| || || |||||||||||
Sbjct 15607 TTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 143 bits (158), Expect = 3e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||| || || ||||| |||| | ||| || ||||||||||||||
Sbjct 15908 TGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGC 15967
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
||||| ||| | || | ||||||||||| ||||||||||| || || ||||| |||||
Sbjct 15968 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTC 16027
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||||||| || | || || ||| || ||||| | || | ||| ||||| ||
Sbjct 16028 GCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTG 16087
Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444
| ||| || |||||||||||||||
Sbjct 16088 AGAGTCTTAACGAAAATTTGCATT 16111
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || || ||| |||| ||| | || |||||||||||||| ||||| || |
Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||||||||||||||||||||| |||| | |||||||| || ||||||
Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| ||||| ||||| || ||| ||||||| || | || || ||| || |||
Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACT 16291
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||| ||||| || | || || || || ||||||||
Sbjct 16292 TCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 132 bits (146), Expect = 5e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||||| || || || || ||||||||||| |||| | ||| ||| | ||
Sbjct 14986 AAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATC 15045
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||| || || || | || | || ||||||||| ||||||||||||||||| ||
Sbjct 15046 TTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTC 15105
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| ||||| ||| ||| || | ||| ||| || || || || | || | ||
Sbjct 15106 TTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGT 15165
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||||||| ||||| || || || |||||
Sbjct 15166 TTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | || || |||||||||| || || || |||||||| || || || |
Sbjct 15199 ACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGA 15258
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || ||| | ||||| ||||| || || ||| |||| | | ||||||||| || ||
Sbjct 15259 AAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGG 15318
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||| || || ||||| |||||| ||||| || ||| | ||||||| || || |
Sbjct 15319 GATTCCCTCCTTGTCTTGAATTTTT-GCTTTCACGTTCTCTATTGTATCAGATGCCTCGA 15377
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | ||| | ||||| || || | |||||| || |||||||||||
Sbjct 15378 CTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || |||| | ||| || || || | || ||||||||||| |||||||| || |
Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | ||||| || || || || ||| | || | ||||||||||| ||||||
Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| ||||| || || ||||| ||| ||| ||| | || || || || ||
Sbjct 15776 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACC 15835
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | ||||| || || || ||||| || |||||||||||
Sbjct 15836 TCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||||| || |||||||| || ||||||||||| | | || || | ||
Sbjct 16354 AAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATC 16413
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||| ||||||||| | || | || ||||||||| || || ||||| || || ||
Sbjct 16414 CTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTC 16473
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| ||||| ||| || || | ||| || || || ||||| | || | ||
Sbjct 16474 TTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGT 16533
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || || || || ||||| || |||||
Sbjct 16534 TTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
>seq4480
Length=409792
Score = 118 bits (130), Expect = 1e-21
Identities = 151/209 (72%), Gaps = 7/209 (3%)
Strand=Plus/Minus
Query 64243 AATCGTCGATTCTTTT-------TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAA 64295
|||| | ||||||||| || |||||||| |||| | || || | || || |
Sbjct 402881 AATCATTGATTCTTTTACCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGA 402822
Query 64296 GCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTA 64355
| || ||||||||| | ||||| ||||||||||| ||||| ||||| ||||| || || |
Sbjct 402821 GTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGA 402762
Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415
|||| ||| ||| || | ||||| || ||||| || | ||| | ||||||||
Sbjct 402761 TTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGC 402702
Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCATT 64444
| |||| || |||||||| || ||||||
Sbjct 402701 CCGTCAGGGTCTTTACGAAGATCTGCATT 402673
>seq2212
Length=252600
Score = 118 bits (130), Expect = 1e-21
Identities = 151/209 (72%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 64243 AATCGTCGATTCTTTT-------TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAA 64295
|||| | ||||||||| || |||||||| |||| | || || | || || |
Sbjct 250271 AATCATTGATTCTTTTACCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGA 250330
Query 64296 GCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTA 64355
| || ||||||||| | ||||| ||||||||||| ||||| ||||| ||||| || || |
Sbjct 250331 GTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGA 250390
Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415
|||| ||| ||| || | ||||| || ||||| || | ||| | ||||||||
Sbjct 250391 TTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGC 250450
Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCATT 64444
| |||| || |||||||| || ||||||
Sbjct 250451 CCGTCAGGGTCTTTACGAAGATCTGCATT 250479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499616551332120
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