Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3001 84.2 2e-11 seq4087 82.4 6e-11 >seq3001 Length=543636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||| | |||||||||||| ||||| || | | |||||| ||||| || ||||| Sbjct 353112 TGGGTTCGCGATCACAGGGTCCACCATAAATTTACGGACACGGATGCCGATCCGCACAAT 353053 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || || ||||| |||| ||||||||| |||||||||| || | ||| | | ||| Sbjct 353052 GCTAAAAGGGGTTTCTTCTTCTCGCACATGGGATGGCTGCTGGTCCGTAAGCATCGGGAC 352993 Query 108586 GTGATC 108591 |||||| Sbjct 352992 GTGATC 352987 >seq4087 Length=110752 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || |||||||| |||||||||||| ||| ||| || || || |||||||| || || Sbjct 32049 GACCACAGGGTCCACCACAAGTACGTTGAGACGGACGCAGATCCCCACAACGCTAAGCGG 32108 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTC 108564 || ||||||||||| ||| |||| |||||| Sbjct 32109 GGCTTCTGGTTCTCCCACATGGGCTGGCTC 32138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381751755132312